View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_195 (Length: 287)
Name: NF0928_low_195
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_195 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 31127744 - 31127487
Alignment:
| Q |
1 |
cataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatat |
100 |
Q |
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| T |
31127744 |
cataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtccccatat |
31127645 |
T |
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| Q |
101 |
tttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttcctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31127644 |
tttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcacaagccgcttcctta |
31127545 |
T |
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| Q |
201 |
ccatccacgggaaccggaggatacagtctcatactctcgcataaagccgcatgagtgt |
258 |
Q |
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| T |
31127544 |
ccatccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgt |
31127487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 31078426 - 31078171
Alignment:
| Q |
1 |
cataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
31078426 |
cataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatat |
31078327 |
T |
|
| Q |
101 |
tttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttcctta |
200 |
Q |
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|||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||| || | | || ||||| ||| |
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| T |
31078326 |
tttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacatcattgtacgctgcttcttta |
31078227 |
T |
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| Q |
201 |
ccatccacgggaaccggaggatacagtctcatactctcgcataaagccgcatgagt |
256 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
31078226 |
gtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagt |
31078171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 31132451 - 31132195
Alignment:
| Q |
2 |
ataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatatt |
101 |
Q |
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|||| |||||||||||||||||| ||||||||| |||||||| ||| || | |||||||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
31132451 |
ataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatatt |
31132352 |
T |
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| Q |
102 |
ttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttac |
201 |
Q |
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||||| |||||||||||| |||||| |||||| | || ||||||||||||||||||| |||||||| |||||||| || || | || ||||||||| |
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| T |
31132351 |
ttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatcatcgtaggctgcttccttag |
31132252 |
T |
|
| Q |
202 |
catccacgggaaccggaggatacagtctcatactctcgcataaagccgcatgagtgt |
258 |
Q |
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||||||| | ||| ||||| | || |||||||||||||||||| | |||||||||| |
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| T |
31132251 |
catccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgt |
31132195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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