View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_2 (Length: 1028)
Name: NF0928_low_2
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 69 - 578
Target Start/End: Original strand, 36961341 - 36961832
Alignment:
| Q |
69 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
168 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36961341 |
gagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
36961440 |
T |
|
| Q |
169 |
taagatggatcaagtgaatgcaaacatgg-agaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcctggagttagagttaagaccat |
267 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
36961441 |
taagatggatcaggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaaacctggagt------taagaccat |
36961534 |
T |
|
| Q |
268 |
tgatatctctgattaaatatagatggagtatttagttttctttctctgttttcggtttacaattgtgttctccttcttcttctaatgcttatatttttgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36961535 |
tgatatctctgattaaatatagatggagtatttagttttctttctctgttttcggtttacaatggtgttctccttcttcttctaatgcttatatttttgt |
36961634 |
T |
|
| Q |
368 |
aatttcgagaatttgtgtgattaaactccggtttgtgaatacaatattcaattttccagttactcgttaaattgaaatattttctttgacaaaaacacac |
467 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
36961635 |
aatttagagaattcgtgtgattaaactccggtttgtgaatacaatattcaattttccagttaatcgtt-aattgaaatattttctttgacaaaaacacac |
36961733 |
T |
|
| Q |
468 |
caaactttgattattgcattggctggcaaatattcaacagaattctaaaaaaggctcttttgtgtgcctctgatcgttttaatgtctaggatcttcttgg |
567 |
Q |
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| T |
36961734 |
cgaactttgattattgcattggctggcaaatattcaacagaat------------tcttttgtgtgcctctgatcgttttaatgtctaggatcttcttgg |
36961821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 656 - 981
Target Start/End: Original strand, 36961832 - 36962155
Alignment:
| Q |
656 |
tagagttataattaataaagaactaactttaattcaacggcacaaggtatgcataaagaggtcaagtaaaaagtttcactcagtaccactactatagcca |
755 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
36961832 |
tagagttataattaataaagaactaacttcaattcaacggcacaaggtatgcataaagaggtcaagtaaaaagtttcattcagtaccactactatagcta |
36961931 |
T |
|
| Q |
756 |
gtacctaccagcttaggaaacagacttgataaagccacaaatatagccagaattttgcaactcaggcaatggatgagaaggacccgttttaccaatgtta |
855 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36961932 |
gtacctaccagcttaggaaacatacttgataaagccacaaatatagccagaattttgcaactcatgcaatggatgagaaggacccgttttaccaatgtta |
36962031 |
T |
|
| Q |
856 |
taatcttagtaaaggattttgattatttctgagaccgcctataatcaatttgagctgacatcggcatttggttatatgataaagaaattagttggaatga |
955 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962032 |
taatcttagtaaagga--ttgattatttctgagaccacctataatcaatttgagctgacatcggcatttggttatatgataaagaaattagttggaatga |
36962129 |
T |
|
| Q |
956 |
tatgatcacgattttaacttgttaat |
981 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
36962130 |
tatgatcacgattttaacttgttaat |
36962155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 35097805 - 35097959
Alignment:
| Q |
80 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
179 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| | |
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| T |
35097805 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35097904 |
T |
|
| Q |
180 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
234 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || ||||| |
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|
| T |
35097905 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35097959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 35098094 - 35098248
Alignment:
| Q |
80 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
179 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| | |
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|
| T |
35098094 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35098193 |
T |
|
| Q |
180 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
234 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || ||||| |
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|
| T |
35098194 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35098248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 36296661 - 36296493
Alignment:
| Q |
69 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
168 |
Q |
| |
|
||||||| | ||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| || || ||||||| ||| |||||| | || ||||| |
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| T |
36296661 |
gagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgc |
36296562 |
T |
|
| Q |
169 |
taagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
237 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
36296561 |
caagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagt |
36296493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 35106984 - 35107137
Alignment:
| Q |
81 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
180 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||||| |
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|
| T |
35106984 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatca |
35107083 |
T |
|
| Q |
181 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
234 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| ||| | ||||||||||| |
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|
| T |
35107084 |
agtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaaga |
35107137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 35072876 - 35072720
Alignment:
| Q |
81 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
180 |
Q |
| |
|
|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| |||||||| |||||||||| || |||||||| |
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|
| T |
35072876 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatca |
35072777 |
T |
|
| Q |
181 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
237 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
35072776 |
agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
35072720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 36940678 - 36940536
Alignment:
| Q |
74 |
agaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaaga |
173 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||| |||||||| |||||||||||| |||||||||| || |||||| | ||||||||||| | |
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|
| T |
36940678 |
agaagcgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaa |
36940579 |
T |
|
| Q |
174 |
tggatcaagtgaatgcaaacatggagaatggtgttctcactgt |
216 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||||||| |
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| T |
36940578 |
tggatcaaatgaaagctgcaatggagaatggcattctcactgt |
36940536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 938 - 981
Target Start/End: Original strand, 36962160 - 36962203
Alignment:
| Q |
938 |
agaaattagttggaatgatatgatcacgattttaacttgttaat |
981 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |
|
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| T |
36962160 |
agaaattagttggaatgatatgatcaggaatttaacttgttaat |
36962203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 24040934 - 24040766
Alignment:
| Q |
79 |
cgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggat |
178 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||| |
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|
| T |
24040934 |
cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat |
24040835 |
T |
|
| Q |
179 |
caagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcct |
247 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||| ||| | |||||||||||||| || |||||| |
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|
| T |
24040834 |
caagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcct |
24040766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 24014376 - 24014219
Alignment:
| Q |
80 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
179 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||| ||||| || || |||||||||| || || ||| | || ||||| || ||||||| |
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| T |
24014376 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatc |
24014277 |
T |
|
| Q |
180 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
237 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
|
|
| T |
24014276 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
24014219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 34919131 - 34919237
Alignment:
| Q |
130 |
tgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaag |
229 |
Q |
| |
|
|||||| || ||||||| |||||| ||| | ||||||| ||| |||||||| || || || ||||||||||| ||||| ||||| ||| |||||||| |
|
|
| T |
34919131 |
tgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaag |
34919230 |
T |
|
| Q |
230 |
gaagaag |
236 |
Q |
| |
|
||||||| |
|
|
| T |
34919231 |
gaagaag |
34919237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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