View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_20 (Length: 620)
Name: NF0928_low_20
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 29 - 620
Target Start/End: Original strand, 40102792 - 40103383
Alignment:
| Q |
29 |
accaacaccgtgtttcaaaatagcctgttccaaatcaaatatactgcgcatatgcgaaacatgttgtcttaactgcacaacagcactccattgattaggg |
128 |
Q |
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| T |
40102792 |
accaacaccatgtttcaaaatagcctgttccaaatcaaatatactgcgcatatgcgaaacatgttgtcttaactgcacaacagcactccattgattagcg |
40102891 |
T |
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| Q |
129 |
ttagcattcacccgagcacaatcttcacaaatacgattatattgaacatactcaacaacataagactgttccaatattgttccattcataacctctttct |
228 |
Q |
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| T |
40102892 |
ttcgcattcacccgagtacaatcttcacaaatacgattatattgaacatactcaacaacataagactgttccaatattgttccatttataacctctttct |
40102991 |
T |
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| Q |
229 |
gaacaaaaaccttgattttgataattttcgagtggggttcagttggaagggtttcagcatgtactaacctaactctcttgaatttcatattctgttctag |
328 |
Q |
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| T |
40102992 |
gaacaaaaaccttgattttgataattttcgagtcgggttcagatggaagggtttcagcatgtactaacctaactctcttgaatttcatattctgttctag |
40103091 |
T |
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| Q |
329 |
tttcttcaaacaaaatgcaagaaactgttttgattgtggtattagtttgatccaagtggggggttgtaaatagcattcgcattcggtgcaatgtgttagt |
428 |
Q |
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| T |
40103092 |
tttcttcaaacaaaatgcaagaaactgttttgattgtggtattagtttgatccaagtggggggttgtaaatagcattcgcattcggtgcaatgtgttagt |
40103191 |
T |
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| Q |
429 |
ctaagtttcttgagtaaaccttctgtgatattggtttttgagcgtaaacatttgacacacatgttagcggtgtttagttcgagtggagaagcgcattggc |
528 |
Q |
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| T |
40103192 |
ctaagtttcttgagtaaaccttctgtgatattggtttttgagcgtaaacatttgacacacatgttagcggtgtttagttcgagtggagatgcgcattggc |
40103291 |
T |
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| Q |
529 |
aacagggaatggtgtggaatgtggcaagatttagttgatccattggtatgcaccttgacattttcggtgatcgaaagaaaataagtgtttcc |
620 |
Q |
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| T |
40103292 |
aacagggaatggtgtggaatgtggcaagatttagttgatccattggtatgcaccttgacattttcggtgatcgaaagaaaataagtgtttcc |
40103383 |
T |
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