View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_200 (Length: 284)

Name: NF0928_low_200
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_200
NF0928_low_200
[»] chr5 (13 HSPs)
chr5 (1-284)||(39460393-39460679)
chr5 (64-283)||(39451209-39451431)
chr5 (1-280)||(39475649-39475934)
chr5 (1-243)||(39486608-39486856)
chr5 (1-243)||(39470541-39470783)
chr5 (64-241)||(39472242-39472419)
chr5 (3-280)||(39483405-39483685)
chr5 (148-256)||(39458064-39458173)
chr5 (142-263)||(39464319-39464440)
chr5 (69-243)||(39454850-39455024)
chr5 (1-104)||(39464457-39464560)
chr5 (141-243)||(43312318-43312420)
chr5 (1-36)||(39451143-39451178)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 39460393 - 39460679
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  39460393 tcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccagaatgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgt 39460492  T
Q  101 ctctgatctcacta---ctagagaacaacatggaaccctcacagcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattttca 197  Q
     ||| |||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  39460493 atctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacatgttctgcactaaaatgattgatattgccaaagaattttca 39460592  T
Q  198 gtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaacgta 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39460593 gtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaacgta 39460679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 64 - 283
Target Start/End: Original strand, 39451209 - 39451431
Alignment:
Q  64 tcctcgaagctcagaaaccaaacatcaaacaagccgtctctgatctcactactagagaac---aacatggaaccctcacagcctttgttgttgacatgtt 160  Q
    ||||||||||||||||||||||  ||||||||||||| ||| | ||||||||| ||| |    || |||||  |||| |  || | ||||||||||||||    
T  39451209 tcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttgacatgtt 39451308  T
Q  161 ctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccac 260  Q
    |||||| | |||||||||||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||||||||||||  ||||||||||| ||     
T  39451309 ctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaatcttcatattcat 39451408  T
Q  261 actcttcgtgaaagagacaacgt 283  Q
    || || |||||| ||||||||||    
T  39451409 accctccgtgaacgagacaacgt 39451431  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 39475649 - 39475934
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccaga---atgaaggctttcctcgaagctcagaaaccaaacatcaaacaagc 97  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||| |      ||||  ||| ||||||||||||||||||||||| | ||||||||    
T  39475649 tcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagc 39475748  T
Q  98 cgtctctgatctcactactagaga---acaacatggaaccctcacagcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattt 194  Q
     |||||  | ||||||||||||||   ||||||||||  |||| | ||||| |||||||||||||||||||| | ||||||  || ||||||| || ||     
T  39475749 tgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttc 39475848  T
Q  195 tcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaa 280  Q
       ||||||||||| || ||||||||||| |||||||||||||||||||  |||||| |  |  |||||||||||||| |||||||    
T  39475849 aatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttgaatctttacctttacactcttcgtgaacgagacaa 39475934  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39486608 - 39486856
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgt 100  Q
    |||||||||||||||||  ||||||||||||||||| ||||||| |||     ||||| ||| |||| |||||||||||||||||| |||||||||| ||    
T  39486608 tcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacgctctccttgaagctcagaaaccaaacgtcaaacaagctgt 39486707  T
Q  101 ctctgatctcactactagagaacaaca------tggaaccctcacagcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattt 194  Q
     ||  | |||||||||||||||  |||      ||||  |||  | ||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  39486708 atccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattt 39486807  T
Q  195 tcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggtt 243  Q
    ||  ||||| ||||  ||||||||||||||||||||||||  |||||||    
T  39486808 tccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtt 39486856  T

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Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39470783 - 39470541
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgt 100  Q
    ||||||||||||||||||||||| ||| ||||| |   || ||| ||||    ||||| ||| ||||||||||||| ||| ||||| ||||||||||  |    
T  39470783 tcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaacaagctat 39470684  T
Q  101 ctctgatctcactactagagaacaacatggaaccctcacagcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagtc 200  Q
    |||  | ||||||||| |||||||||||||| ||||| | ||  |  |||||||||||||||||||||||||||||||| ||||||||||||||||  ||    
T  39470683 ctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctc 39470584  T
Q  201 cctacgcttgtcttcttcacttccggtgttgcttcccttggtt 243  Q
    ||| || |||| || |||||||||||  |||||| ||||||||    
T  39470583 cctgcgtttgtgttgttcacttccggcattgctttccttggtt 39470541  T

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Target: chr5; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 39472242 - 39472419
Alignment:
Q  64 tcctcgaagctcagaaaccaaacatcaaacaagccgtctctgatctcactactagagaacaacatggaaccctcacagcctttgttgttgacatgttctg 163  Q
    ||||||||||||||||||||||| |||||||||  || ||| | |||| ||| |||  | || |||||  |||  | || ||||||||||||||||||||    
T  39472242 tcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttctg 39472341  T
Q  164 cacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttgg 241  Q
    |||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||||||||||| | ||||||    
T  39472342 cacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttgg 39472419  T

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Target: chr5; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 39483405 - 39483685
Alignment:
Q  3 atcaaccttccagaagtttctcttcccccaaacatcgaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccgtct 102  Q
    |||||||||||||||  || ||||||||||||| |||| | |  |||    || || ||| |||| |||||||||||||||||||| | |||||| ||||    
T  39483405 atcaaccttccagaatgttatcttcccccaaacttcgatctagtttctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctgtct 39483504  T
Q  103 ctgatctcactactagagaa---caacatggaaccctcacagcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagt 199  Q
    |  | |||||||||||||||   |||||||||  |||| | ||||| |||||||||||||||||||| | |||||||||| ||||||| || ||    ||    
T  39483505 ccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgt 39483604  T
Q  200 ccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaa 280  Q
    ||||||||| || |||| ||||| | ||||||||||||||||||  |||||| || | ||||||||||||||| |||||||    
T  39483605 ccctacgctcgttttctacactttcagtgttgcttcccttggtttgaatctttatcttcacactcttcgtgaacgagacaa 39483685  T

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Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 39458173 - 39458064
Alignment:
Q  148 ttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttgg-ttcaa 246  Q
    ||||||||||||||||||| | |||||||||| |||  ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| || ||    
T  39458173 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 39458074  T
Q  247 atcttcatat 256  Q
    ||||||||||    
T  39458073 atcttcatat 39458064  T

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Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 39464440 - 39464319
Alignment:
Q  142 cctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttgg 241  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| || |||| |||||||||||  ||||||||| ||||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 39464341  T
Q  242 ttcaaatcttcatatccacact 263  Q
    ||  ||||||||||| ||||||    
T  39464340 tttgaatcttcatattcacact 39464319  T

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Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 39454850 - 39455024
Alignment:
Q  69 gaagctcagaaaccaaacatcaaacaagccgtctctgatctcactactagagaacaacatggaaccctcacagcctttgttgttgacatgttctgcacaa 168  Q
    |||||||||||||||||| ||||||||||||| ||| | |||| |||| | |||  |  ||||  |||| |||| || ||||||||||||| |||||||     
T  39454850 gaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgttgacatgtcctgcacag 39454949  T
Q  169 acatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggtt 243  Q
     |||||||||| |||||||||| || ||  ||||||| || ||||||||||||||| |||| |||| ||||||||    
T  39454950 ccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctttccttggtt 39455024  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39464560 - 39464457
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaacatc-gaaccaagttccagaatgaaggctttcctcgaagctcagaaaccaaacatcaaacaagccg 99  Q
    |||||||||||||||||||||||||||||| |||| || || ||| |||||   ||||| ||| |||| || ||||| ||||||||| ||||||||||||    
T  39464560 tcatcaaccttccagaagtttctcttcccc-aaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccg 39464462  T
Q  100 tctct 104  Q
    |||||    
T  39464461 tctct 39464457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 43312420 - 43312318
Alignment:
Q  141 gcctttgttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttg 240  Q
    ||||| |||||||||||||||||||| | |||||||||| | || || || |||   |||||| | || |||| |||||||||||||||||||| |||||    
T  43312420 gccttcgttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttccttg 43312321  T
Q  241 gtt 243  Q
    |||    
T  43312320 gtt 43312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39451143 - 39451178
Alignment:
Q  1 tcatcaaccttccagaagtttctcttcccccaaaca 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  39451143 tcatcaaccttccagaagtttctcttcctccaaaca 39451178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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