View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_208 (Length: 272)
Name: NF0928_low_208
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_208 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 3307596 - 3307774
Alignment:
| Q |
10 |
attaatgacaattctggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacacatacacacca |
109 |
Q |
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| T |
3307596 |
attaatgacaattctggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacacatacacacca |
3307695 |
T |
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| Q |
110 |
agattcaagagcttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccccctatg |
188 |
Q |
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| T |
3307696 |
agattcgagagcttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccctctatg |
3307774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 3300892 - 3301079
Alignment:
| Q |
10 |
attaatgacaattctggcagaataattcaaaaccaggttgcat--acacaatacaataatgacataacgtttacaaataattacaagaacacatacacac |
107 |
Q |
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| T |
3300892 |
attaatgacaattctggctgaataactcacaaccagattgcatacacacagtgcaataatgacagaaagttcaaaaaatattacaagaaaacagacacac |
3300991 |
T |
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| Q |
108 |
caagattcaagag-------------cttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccc |
182 |
Q |
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| T |
3300992 |
aaagattcgagagctcggcctctccccttctcaaatgttcgagagctggatctctcccactaaccactcgataacttcccgataaccc |
3301079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 18999536 - 18999586
Alignment:
| Q |
122 |
ttcccaaatgttcgagagttggatctctcccactgaccactcaataacttc |
172 |
Q |
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| T |
18999536 |
ttcccaaatgttcgagagttgggtctctcccaataaccactcaataacttc |
18999586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 10878408 - 10878351
Alignment:
| Q |
125 |
ccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccc |
182 |
Q |
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| T |
10878408 |
ccaaatgtttgagagttgggtctctcccaataaccactcaataacttccagacaaccc |
10878351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 12611 - 12661
Alignment:
| Q |
122 |
ttcccaaatgttcgagagttggatctctcccactgaccactcaataacttc |
172 |
Q |
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| T |
12611 |
ttcccaaatgctcgagagttgggtctctcccaataaacactcaataacttc |
12661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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