View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_209 (Length: 268)
Name: NF0928_low_209
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_209 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 36847254 - 36847455
Alignment:
| Q |
47 |
cctatccttgagaaaaactacaaggcatcttgtttagccaacagaattgcatatgatctagaagataagcattgtgaatactttcatgattttcatcctt |
146 |
Q |
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| T |
36847254 |
cctatccttgagaaaaactacaaggcatcttgtttagccaacagaattgcatatgatctagaagataagcattgtgaatactttcatgattttcatcctt |
36847353 |
T |
|
| Q |
147 |
tacccggtatcaacccggaaattccaaacttccaaaggagtgttaagaaatgtg------acatcaacaccacaaaagatggggtcgttatgccagtctg |
240 |
Q |
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| T |
36847354 |
tacccggtatcaaccccgaaattccaaacttccaaaggagtgttaagaaatgtgacatcaacatcaacaccacaagagatggggtcgttatgccagtttg |
36847453 |
T |
|
| Q |
241 |
tg |
242 |
Q |
| |
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|| |
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| T |
36847454 |
tg |
36847455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 36840367 - 36840568
Alignment:
| Q |
47 |
cctatccttgagaaaaactacaaggcatcttgtttagccaacagaattgcatatgatctagaagataagcattgtgaatactttcatgattttcatcctt |
146 |
Q |
| |
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|||||||| ||| |||||||| | |||||||||||||||| || | ||||||||||| || ||||||| ||||||||| ||||||||||||||||||||| |
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| T |
36840367 |
cctatcctcgaggaaaactacgacgcatcttgtttagccatcaaatttgcatatgatttaaaagataaacattgtgaagactttcatgattttcatcctt |
36840466 |
T |
|
| Q |
147 |
tacccggtatcaacccggaaattccaaacttccaaaggagtgttaagaaatgtga------catcaacaccacaaaagatggggtcgttatgccagtctg |
240 |
Q |
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||||| | | ||||| |||||||||||||||| ||||||| ||||||| | ||||||||||||||||||| ||||| |||||| ||| || |
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| T |
36840467 |
tacccagcagaaaccctagcattccaaacttccaaaagagtgtttggaaatgtaacatcaccatcaacaccacaaaagattgggtccttatgcgagtttg |
36840566 |
T |
|
| Q |
241 |
tg |
242 |
Q |
| |
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|| |
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|
| T |
36840567 |
tg |
36840568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 36835794 - 36835861
Alignment:
| Q |
47 |
cctatccttgagaaaaactacaaggcatcttgtttagccaacagaattgcatatgatctagaagataa |
114 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||| ||||||| ||||||| ||| |||| |
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| T |
36835794 |
cctatcctagagaaaactgacaagccatcttgtttagccaacaaaattgcaaatgatcttgaacataa |
36835861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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