View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_21 (Length: 617)
Name: NF0928_low_21
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 28 - 600
Target Start/End: Original strand, 7224463 - 7225035
Alignment:
| Q |
28 |
cataagcaacttcaactcgaaagttggtaaatgaagtgtgctgcccagttaacta---ttggagatatttagcgatggagcattttgagaatttcagggg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7224463 |
cataagcaacttcaactcgaaagttggtaaatgaagtgtgctgcccagttaactaccgttggagatatttagcgatggagcattttgagaatttcagggg |
7224562 |
T |
|
| Q |
125 |
tgttaaggagacattttggaagtgaaaagagcaattttatttatttctttttaatcgagtccaactttgaattagtgnnnnnnnaattgaataaataagt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7224563 |
tgttaaggagacattttggaagtgaaaagagcaattttatttatttctttttaatcaagtccaactttgaattagtgtttttttaattgaataaataagt |
7224662 |
T |
|
| Q |
225 |
ctgaaaagaatgagacgagtttgtttgcgtcttccttctttgacaaaaccctaaaatctccaactttcagaaaacgctttatatatctcaatttttcaaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7224663 |
ctgaaaagaatgagacgagtttgtttgcgtcttccttctttgacaaaaccctaaaatctccaattttcagaaaacgctttatatatctcaatttttcaaa |
7224762 |
T |
|
| Q |
325 |
ccaatcgttgttatttcttccacaaaacaacaatggcttcttcagaagaatcattatatttacctgatgattgctggatacttatcttcaaactggtcac |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7224763 |
ccaatcgttgttatttcttccacaaaacaacaatggcttcttcagaagaatcattatatttacctgatgattgctggatacttatcttcaaactggtcac |
7224862 |
T |
|
| Q |
425 |
cgacggctgcgacgacagagaatacagtcgctatttgaactctctatcctgcatatcgaaacagctcctctccatcaccaacaatttccaattctctctc |
524 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7224863 |
cgacggctgcgacgacagagaatacaaccgctatttgaaatctctatcctgcatatcgaaacagctcctctccattaccaacaatttccaattctctctc |
7224962 |
T |
|
| Q |
525 |
actatctatactgcaacactcccttactcttgtctcctatttcaaaggtttcccaatctcacctccctaaacctct |
600 |
Q |
| |
|
||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7224963 |
actatctatcctgcaacactcccttacgc---tcgcctatttcaaaggtttcccaatctcacctccctaaacctct |
7225035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 6007708 - 6007657
Alignment:
| Q |
480 |
tcgaaacagctcctctccatcaccaacaatttccaattctctctcactatct |
531 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
6007708 |
tcgaaacagttcctctccatcaccaacagtctccgattctctctcactatct |
6007657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 513453 - 513497
Alignment:
| Q |
483 |
aaacagctcctctccatcaccaacaatttccaattctctctcact |
527 |
Q |
| |
|
|||||| | |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
513453 |
aaacagttactctccatcaccaacaatctccgattctctctcact |
513497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 528 times since January 2019
Visitors: 6717