View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_219 (Length: 263)

Name: NF0928_low_219
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_219
NF0928_low_219
[»] chr6 (20 HSPs)
chr6 (140-263)||(34883513-34883636)
chr6 (12-119)||(31110759-31110864)
chr6 (12-114)||(17598554-17598656)
chr6 (12-92)||(11427640-11427720)
chr6 (12-115)||(31976247-31976350)
chr6 (12-123)||(23128125-23128236)
chr6 (12-117)||(30341358-30341463)
chr6 (12-124)||(15832567-15832679)
chr6 (12-116)||(15990040-15990144)
chr6 (12-92)||(32869700-32869780)
chr6 (12-114)||(4231548-4231650)
chr6 (12-114)||(15508022-15508124)
chr6 (12-114)||(29857827-29857929)
chr6 (12-117)||(6209463-6209568)
chr6 (12-109)||(22880656-22880753)
chr6 (46-114)||(31109432-31109500)
chr6 (12-118)||(12732478-12732584)
chr6 (49-115)||(22422053-22422119)
chr6 (12-109)||(28536486-28536581)
chr6 (12-114)||(31953028-31953130)
[»] chr3 (32 HSPs)
chr3 (12-120)||(11347920-11348028)
chr3 (12-114)||(26141530-26141632)
chr3 (12-114)||(47531865-47531967)
chr3 (12-116)||(27714889-27714993)
chr3 (12-116)||(41189762-41189866)
chr3 (12-118)||(49607410-49607516)
chr3 (12-115)||(17470404-17470507)
chr3 (12-114)||(51419358-51419460)
chr3 (12-114)||(53982011-53982113)
chr3 (12-92)||(26754717-26754797)
chr3 (12-116)||(54868893-54868997)
chr3 (12-115)||(8956761-8956864)
chr3 (12-91)||(31456712-31456791)
chr3 (12-114)||(33644200-33644302)
chr3 (12-110)||(52629304-52629402)
chr3 (12-116)||(11907369-11907473)
chr3 (12-60)||(25407145-25407193)
chr3 (12-115)||(24699952-24700055)
chr3 (12-115)||(35536625-35536728)
chr3 (46-116)||(11095385-11095455)
chr3 (12-114)||(14623837-14623939)
chr3 (12-114)||(20764913-20765015)
chr3 (12-109)||(13898053-13898150)
chr3 (12-92)||(8076415-8076495)
chr3 (12-84)||(9563029-9563101)
chr3 (12-116)||(33118849-33118953)
chr3 (40-116)||(35093583-35093659)
chr3 (12-92)||(36331327-36331407)
chr3 (12-92)||(48587089-48587169)
chr3 (46-117)||(36707456-36707527)
chr3 (56-102)||(32605956-32606002)
chr3 (12-114)||(45058551-45058652)
[»] chr2 (32 HSPs)
chr2 (12-119)||(42257188-42257295)
chr2 (12-114)||(40613900-40614002)
chr2 (12-116)||(9058478-9058582)
chr2 (12-120)||(38273140-38273248)
chr2 (12-115)||(5574486-5574589)
chr2 (12-115)||(33436210-33436313)
chr2 (12-118)||(45097733-45097839)
chr2 (12-109)||(19930818-19930915)
chr2 (12-116)||(10249380-10249484)
chr2 (12-119)||(33436098-33436205)
chr2 (12-114)||(13438343-13438445)
chr2 (12-114)||(17473020-17473122)
chr2 (12-114)||(27864704-27864806)
chr2 (12-114)||(28381653-28381755)
chr2 (12-109)||(28863460-28863557)
chr2 (14-115)||(32505648-32505749)
chr2 (14-114)||(4060685-4060785)
chr2 (16-115)||(2533123-2533221)
chr2 (12-114)||(38732354-38732456)
chr2 (12-114)||(40701478-40701580)
chr2 (12-109)||(41575142-41575240)
chr2 (12-92)||(2997485-2997565)
chr2 (12-115)||(7465733-7465836)
chr2 (12-119)||(20700810-20700917)
chr2 (12-115)||(36168835-36168938)
chr2 (12-65)||(13365402-13365455)
chr2 (12-116)||(30915461-30915565)
chr2 (46-117)||(38882846-38882916)
chr2 (16-114)||(43490121-43490219)
chr2 (49-114)||(17820039-17820104)
chr2 (12-64)||(3034981-3035033)
chr2 (12-64)||(3154193-3154245)
[»] chr5 (24 HSPs)
chr5 (12-115)||(6679697-6679800)
chr5 (12-114)||(28177775-28177877)
chr5 (12-115)||(2740273-2740376)
chr5 (12-118)||(13811648-13811754)
chr5 (12-114)||(26720516-26720618)
chr5 (12-114)||(26990265-26990367)
chr5 (12-114)||(35943890-35943992)
chr5 (14-114)||(14831814-14831914)
chr5 (12-116)||(15409608-15409712)
chr5 (12-115)||(2252166-2252269)
chr5 (12-118)||(18520882-18520988)
chr5 (12-114)||(35785199-35785301)
chr5 (12-114)||(40145407-40145509)
chr5 (12-117)||(3921263-3921368)
chr5 (14-118)||(31008984-31009088)
chr5 (16-91)||(42414304-42414379)
chr5 (12-114)||(33149636-33149738)
chr5 (14-114)||(20073516-20073616)
chr5 (12-116)||(36732940-36733044)
chr5 (12-91)||(39557515-39557594)
chr5 (12-102)||(33825322-33825412)
chr5 (12-116)||(39688895-39688999)
chr5 (46-115)||(41470448-41470517)
chr5 (40-92)||(16327923-16327975)
[»] chr1 (28 HSPs)
chr1 (12-117)||(32813244-32813349)
chr1 (12-114)||(27564733-27564835)
chr1 (14-115)||(51898683-51898784)
chr1 (12-115)||(37926436-37926539)
chr1 (12-118)||(8346386-8346492)
chr1 (12-116)||(49811525-49811629)
chr1 (12-118)||(5958998-5959104)
chr1 (12-109)||(44548374-44548471)
chr1 (15-119)||(37649193-37649297)
chr1 (16-116)||(38632323-38632423)
chr1 (14-117)||(2581912-2582015)
chr1 (12-118)||(38595150-38595256)
chr1 (12-114)||(41608491-41608593)
chr1 (16-114)||(48716284-48716382)
chr1 (12-120)||(26440728-26440836)
chr1 (12-114)||(43132-43234)
chr1 (12-114)||(9474874-9474976)
chr1 (12-114)||(47452318-47452420)
chr1 (12-114)||(50590998-50591100)
chr1 (16-109)||(26274437-26274530)
chr1 (16-113)||(44453980-44454077)
chr1 (12-92)||(3000341-3000421)
chr1 (12-92)||(50630480-50630560)
chr1 (12-87)||(41758832-41758907)
chr1 (14-92)||(11152378-11152456)
chr1 (14-65)||(3302533-3302584)
chr1 (14-71)||(48489343-48489400)
chr1 (45-117)||(23597122-23597194)
[»] chr7 (33 HSPs)
chr7 (12-114)||(19329842-19329944)
chr7 (12-109)||(3784000-3784097)
chr7 (12-113)||(35522877-35522978)
chr7 (14-118)||(7727902-7728006)
chr7 (12-116)||(19436185-19436289)
chr7 (12-115)||(3434561-3434664)
chr7 (12-92)||(3694389-3694469)
chr7 (12-115)||(22343360-22343463)
chr7 (12-115)||(36361911-36362014)
chr7 (12-118)||(35468853-35468959)
chr7 (12-117)||(40957704-40957809)
chr7 (12-116)||(7389387-7389491)
chr7 (12-116)||(38044195-38044299)
chr7 (12-91)||(8238236-8238315)
chr7 (12-115)||(36362025-36362128)
chr7 (12-123)||(41915732-41915843)
chr7 (12-114)||(21234401-21234503)
chr7 (12-114)||(32564424-32564526)
chr7 (12-114)||(35137533-35137635)
chr7 (20-114)||(46374808-46374902)
chr7 (12-109)||(32951491-32951588)
chr7 (12-116)||(8080381-8080485)
chr7 (12-116)||(36208171-36208275)
chr7 (12-115)||(26296643-26296746)
chr7 (12-123)||(38837208-38837319)
chr7 (12-119)||(40846111-40846218)
chr7 (12-115)||(46033799-46033902)
chr7 (12-114)||(4999512-4999614)
chr7 (12-114)||(38267040-38267142)
chr7 (45-118)||(18207176-18207249)
chr7 (12-84)||(16374822-16374894)
chr7 (38-118)||(45223038-45223118)
chr7 (12-114)||(41423682-41423784)
[»] chr8 (27 HSPs)
chr8 (14-115)||(37038478-37038579)
chr8 (12-115)||(32032724-32032826)
chr8 (12-118)||(5957826-5957932)
chr8 (12-114)||(43414579-43414681)
chr8 (12-92)||(40423941-40424021)
chr8 (12-114)||(15048180-15048281)
chr8 (12-114)||(15197333-15197435)
chr8 (12-112)||(10621085-10621185)
chr8 (12-114)||(504119-504221)
chr8 (12-114)||(1179938-1180040)
chr8 (12-118)||(16056399-16056505)
chr8 (12-118)||(16383373-16383479)
chr8 (12-92)||(14547944-14548024)
chr8 (12-116)||(15258927-15259031)
chr8 (12-116)||(24307791-24307895)
chr8 (12-114)||(12831047-12831149)
chr8 (12-114)||(23122595-23122697)
chr8 (12-114)||(34012294-34012396)
chr8 (12-116)||(4854861-4854965)
chr8 (12-116)||(34307214-34307318)
chr8 (12-116)||(42221513-42221617)
chr8 (12-114)||(30479472-30479574)
chr8 (12-117)||(10284629-10284734)
chr8 (12-92)||(8841430-8841510)
chr8 (59-115)||(25838196-25838252)
chr8 (51-118)||(24307625-24307692)
chr8 (12-65)||(9122234-9122287)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-123)||(10107-10218)
[»] chr4 (25 HSPs)
chr4 (12-114)||(41236347-41236449)
chr4 (12-118)||(50052426-50052532)
chr4 (14-114)||(50526171-50526271)
chr4 (12-116)||(55475189-55475293)
chr4 (12-123)||(19670714-19670825)
chr4 (12-115)||(47986207-47986310)
chr4 (12-82)||(56300163-56300233)
chr4 (16-116)||(29547961-29548061)
chr4 (12-116)||(32766956-32767060)
chr4 (12-114)||(6034044-6034146)
chr4 (12-118)||(42044365-42044471)
chr4 (12-117)||(29239883-29239988)
chr4 (12-116)||(48183047-48183151)
chr4 (12-114)||(40574779-40574881)
chr4 (12-115)||(44536744-44536846)
chr4 (12-115)||(50813890-50813993)
chr4 (12-118)||(480445-480551)
chr4 (12-114)||(11511460-11511562)
chr4 (12-114)||(31910192-31910294)
chr4 (12-92)||(17983741-17983821)
chr4 (12-91)||(29977908-29977987)
chr4 (12-114)||(3481654-3481756)
chr4 (12-114)||(8343161-8343263)
chr4 (12-65)||(41823931-41823984)
chr4 (16-114)||(54473535-54473633)
[»] scaffold1268 (1 HSPs)
scaffold1268 (12-114)||(927-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (12-114)||(927-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (12-114)||(4029-4131)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-89)||(152523-152600)
[»] scaffold0316 (1 HSPs)
scaffold0316 (12-91)||(17077-17156)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 34883636 - 34883513
Alignment:
Q  140 agtggtaagacccatatatattttatctaatgaaaaagtaaattttagaaagaatacgttaaaacggatgctatttgtgttactctattaatgattagga 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34883636 agtggtaagacccatatatgttttatctaatgaaaaagtaaatttgagaaagaatacgttaaaatggatgctatttgtgttactctattaatgattagga 34883537  T
Q  240 aaagtgaggggtgaaaatagcaat 263  Q
    ||||||||||||||||||||||||    
T  34883536 aaagtgaggggtgaaaatagcaat 34883513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31110759 - 31110864
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||||  ||||| ||||||| | |||||||||||||||  |||||||| ||||||||    
T  31110759 agagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 31110856  T
Q  112 ctctttta 119  Q
    ||||||||    
T  31110857 ctctttta 31110864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17598656 - 17598554
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||||||||||||||||||||||||   ||||||| |||||| |    
T  17598656 agagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 17598557  T
Q  112 ctc 114  Q
    |||    
T  17598556 ctc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 11427720 - 11427640
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaa 11427640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 31976350 - 31976247
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || | ||| ||| |||||||||||||||||||||  ||| ||| | | |||||||||||||  |||||||| ||||||||    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  112 ctct 115  Q
    ||||    
T  31976250 ctct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 23128125 - 23128236
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  |||||||  |||  ||||||||||||||||||||  ||||||| ||||||||  ||| ||||  ||||||| |||||| |    
T  23128125 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T
Q  112 ctcttttaaaaa 123  Q
     |||||||||||    
T  23128225 ttcttttaaaaa 23128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 30341358 - 30341463
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  30341358 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 30341457  T
Q  112 ctcttt 117  Q
    ||||||    
T  30341458 ctcttt 30341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 15832679 - 15832567
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| |||  ||||||||||||||  |||  |||||||| |||||||||||  ||||||| ||| ||||| ||||||||  ||||||| |||||| |    
T  15832679 agagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcatta 15832580  T
Q  112 ctcttttaaaaat 124  Q
    ||||||| |||||    
T  15832579 ctcttttgaaaat 15832567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15990040 - 15990144
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  15990040 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15990139  T
Q  112 ctctt 116  Q
    |||||    
T  15990140 ctctt 15990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 32869780 - 32869700
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 32869700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 4231650 - 4231548
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  |||||||||||||||||||||  || |||  | |||||||||||||||  |||| |||  |||||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataa 4231551  T
Q  112 ctc 114  Q
    |||    
T  4231550 ctc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15508022 - 15508124
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  15508022 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15508121  T
Q  112 ctc 114  Q
    |||    
T  15508122 ctc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 29857929 - 29857827
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| |||||||  | |  ||||||||||||||||||||  ||| ||||| |||||||||| |||||  ||||||| |||||| |    
T  29857929 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 29857830  T
Q  112 ctc 114  Q
    |||    
T  29857829 ctc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 6209463 - 6209568
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||| |||| || ||||  |||  ||||| ||||||||||||||| |||||||   |||||||||||||||   ||||||| |||||| |    
T  6209463 agagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatta 6209562  T
Q  112 ctcttt 117  Q
    ||||||    
T  6209563 ctcttt 6209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 22880656 - 22880753
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||| || ||||  |||  |||||||||| |||||||||  ||||||| | |||||||||||||||   ||||||| ||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  46 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||   |||||||| ||||| ||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 12732584 - 12732478
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| ||||||| ||  ||||||| ||   |||||||||||||||||||||  ||||||    | ||||||||| ||| ||||||||| |||||| |    
T  12732584 agagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcatta 12732485  T
Q  112 ctctttt 118  Q
    |||||||    
T  12732484 ctctttt 12732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  49 tgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||| |||||| ||| |||||| |||| |||||||||||||  |||||||| |||||| |||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 28536486 - 28536581
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||  || |||| |||| |  ||||||||||||||||||  ||||||  | |||||||||||||||  |||| ||| ||||||    
T  28536486 agagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 31953028 - 31953130
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||   | |||| |||| ||| |||||||||||| ||||  ||||||  | |||||||||||||||  |||||||| |||||| |    
T  31953028 agagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatta 31953127  T
Q  112 ctc 114  Q
    |||    
T  31953128 ctc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 11347920 - 11348028
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| |||||| ||||| ||  ||||||||||||||||||||| |||||||| ||||||||| |||||||  |||||||| ||||||||    
T  11347920 agagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataa 11348019  T
Q  112 ctcttttaa 120  Q
    |||||||||    
T  11348020 ctcttttaa 11348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26141530 - 26141632
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||| ||| |||||||||||||||||||||  ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26141629  T
Q  112 ctc 114  Q
    |||    
T  26141630 ctc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 47531967 - 47531865
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || | ||||||  ||||||||||||| ||||||| |||| ||||| |||||||||| ||||  |||||||| ||||||||    
T  47531967 agagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataa 47531868  T
Q  112 ctc 114  Q
    |||    
T  47531867 ctc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 27714889 - 27714993
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | |||||| |||||||||  ||||||| |||||| |    
T  27714889 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatta 27714988  T
Q  112 ctctt 116  Q
    |||||    
T  27714989 ctctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 41189762 - 41189866
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||||| ||||  ||||||| |||||||||||||||||  |||| ||| ||||||||    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataa 41189861  T
Q  112 ctctt 116  Q
    |||||    
T  41189862 ctctt 41189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 49607516 - 49607410
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  49607516 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 49607417  T
Q  112 ctctttt 118  Q
    |||||||    
T  49607416 ctctttt 49607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 17470507 - 17470404
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||| ||||| ||||||||||||||||  ||||||| |||||| |    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T
Q  112 ctct 115  Q
    ||||    
T  17470407 ctct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 51419358 - 51419460
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || || || ||  |||||||||||||||||||||  ||| ||| ||||||||| || ||||  |||||||| ||||||||    
T  51419358 agagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataa 51419457  T
Q  112 ctc 114  Q
    |||    
T  51419458 ctc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 53982113 - 53982011
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 53982014  T
Q  112 ctc 114  Q
    |||    
T  53982013 ctc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 26754797 - 26754717
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||| ||||||||||| || ||||| ||| ||| ||||||||||||||||| ||||| || | |||||||||||||||    
T  26754797 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaa 26754717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 54868893 - 54868997
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  54868893 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 54868992  T
Q  112 ctctt 116  Q
    |||||    
T  54868993 ctctt 54868997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 8956864 - 8956761
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||| ||||||||||||| | | |||| |||| ||||||||| |||||| ||||  ||||||| ||||||||||||| |||  |||||||| |||||| |    
T  8956864 agaggaagtgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcatta 8956765  T
Q  112 ctct 115  Q
    ||||    
T  8956764 ctct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 31456791 - 31456712
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | ||||||||| ||||    
T  31456791 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgccta 31456712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 33644302 - 33644200
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||| ||   ||||||| |||||| |    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatta 33644203  T
Q  112 ctc 114  Q
    |||    
T  33644202 ctc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 52629402 - 52629304
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcata 110  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||||    
T  52629402 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11907473 - 11907369
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| ||||||||||| || ||||||||| ||| |||||||||||||||||| |||  |    ||||||| |||||||   ||||||| ||||||||    
T  11907473 agagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataa 11907374  T
Q  112 ctctt 116  Q
    |||||    
T  11907373 ctctt 11907369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 25407145 - 25407193
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagattttt 60  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||    
T  25407145 agagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttt 25407193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 24699952 - 24700055
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||| |||| ||||  ||  |||||| ||||||||| ||||  ||||||||| |||||||||| ||||  |||||||| |||||| |    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatta 24700051  T
Q  112 ctct 115  Q
    ||||    
T  24700052 ctct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 35536728 - 35536625
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||| ||||||||||||| | | |||| |||| ||||||||| |||||| ||||  ||||||| | ||||||||||| |||  |||||||| |||||| |    
T  35536728 agaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcatta 35536629  T
Q  112 ctct 115  Q
    ||||    
T  35536628 ctct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 11095385 - 11095455
Alignment:
Q  46 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctt 116  Q
    ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| ||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 14623837 - 14623939
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||   | |||| |||| ||| |||||||||||| ||||  ||||||  | |||||||||||||||  |||||||| |||||| |    
T  14623837 agagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatta 14623936  T
Q  112 ctc 114  Q
    |||    
T  14623937 ctc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 20764913 - 20765015
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| | || ||||| ||  |||||||||||||||||||||  ||| |||   |||||| ||||||||  |||||||| | ||||||    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataa 20765012  T
Q  112 ctc 114  Q
    |||    
T  20765013 ctc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 13898053 - 13898150
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||   | |||| |||| |||||||||||||||| ||||  ||||||  | |||||||||||||||  |||| ||| ||||||    
T  13898053 agagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 8076495 - 8076415
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||| ||||||||||    
T  8076495 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaa 8076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 9563101 - 9563029
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattg 84  Q
    |||||||||||| ||||||||||||||  |||  ||||||||||||||| | || |||||||| | |||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattg 9563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 33118849 - 33118953
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| || ||  |||||||  |||  |||||||| |||||||||||  ||||||| | ||||||| |||||||   ||||||| ||||||||    
T  33118849 agagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataa 33118948  T
Q  112 ctctt 116  Q
    |||||    
T  33118949 ctctt 33118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 35093659 - 35093583
Alignment:
Q  40 atgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctt 116  Q
    |||| ||| ||||||||||||| ||| |||||||| | ||||||| ||||||||  ||||||| |||| ||||||||    
T  35093659 atgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 36331327 - 36331407
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | || ||||||||||||    
T  36331327 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 48587089 - 48587169
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||| ||||||| |||||||  |||  ||||||||||||||| |||   ||||||| | |||||||||||||||    
T  48587089 agagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaa 48587169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 36707456 - 36707527
Alignment:
Q  46 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 117  Q
    |||||||||||||||||||| |||||||| | ||||||| |||||||   | ||||| |||||| |||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactcttt 36707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 32605956 - 32606002
Alignment:
Q  56 tttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctat 102  Q
    |||||||||||||||||||  |||||||||||||||| | |||||||    
T  32605956 tttttgtgtgaatgtcaaagaatgtattgccacctaagattgtctat 32606002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 45058551 - 45058652
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||| | ||||||| || |||||||| |||| |||||||||||| ||||  |||| || | |||||||||||||||   ||| ||| ||||||||    
T  45058551 agagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgtttatgtatcataa 45058649  T
Q  112 ctc 114  Q
    |||    
T  45058650 ctc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 42257295 - 42257188
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||  |||||||||||||||| ||||  ||||||| |||||||||||||||||| |||||||| ||||||||    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataa 42257196  T
Q  112 ctctttta 119  Q
    ||||||||    
T  42257195 ctctttta 42257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40613900 - 40614002
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||  |||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 40613999  T
Q  112 ctc 114  Q
    |||    
T  40614000 ctc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 9058582 - 9058478
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  9058582 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9058483  T
Q  112 ctctt 116  Q
    |||||    
T  9058482 ctctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 38273140 - 38273248
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||| |||| || ||||| ||   ||||||||||||||||||||  ||| ||| | |||||||||| |||| ||||||||| ||||||||    
T  38273140 agagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataa 38273239  T
Q  112 ctcttttaa 120  Q
    |||||||||    
T  38273240 ctcttttaa 38273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 5574486 - 5574589
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||| ||||  ||||||| | ||||||||||||||| | ||||||| |||||| |    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T
Q  112 ctct 115  Q
    ||||    
T  5574586 ctct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 33436313 - 33436210
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||||   |||| ||| ||||||||||||||||| ||||  ||||||||| |||||||||| ||||  |||||||| |||||| |    
T  33436313 agagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcatta 33436214  T
Q  112 ctct 115  Q
    ||||    
T  33436213 ctct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 45097733 - 45097839
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||| ||  ||||||  |||||||||||||||||  |||| ||| ||||||||    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  112 ctctttt 118  Q
    |||||||    
T  45097833 ctctttt 45097839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 19930818 - 19930915
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    |||||||||||| |||||| || |||| ||||  |||||||||||||||||||| |||||||| | |||||||||||||||   ||||||| ||||||    
T  19930818 agagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 10249380 - 10249484
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||   ||||||| |||||| |    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 10249479  T
Q  112 ctctt 116  Q
    |||||    
T  10249480 ctctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 33436098 - 33436205
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 33436197  T
Q  112 ctctttta 119  Q
    ||||||||    
T  33436198 ctctttta 33436205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 13438445 - 13438343
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| ||||||||| |||||||   ||||||| |||||| |    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatta 13438346  T
Q  112 ctc 114  Q
    |||    
T  13438345 ctc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17473122 - 17473020
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||| ||||   ||||||| |||||| |    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 17473023  T
Q  112 ctc 114  Q
    |||    
T  17473022 ctc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 27864806 - 27864704
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| || ||||  |||| |||||||||||||||||||| |||||||| | ||||||||||| |||   ||||||| |||||| |    
T  27864806 agagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatta 27864707  T
Q  112 ctc 114  Q
    |||    
T  27864706 ctc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 28381653 - 28381755
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |  ||||| |||  ||||||||||||||||||||  |||| |||| |||||||||||||||   ||||||| |||||| |    
T  28381653 agagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcatta 28381752  T
Q  112 ctc 114  Q
    |||    
T  28381753 ctc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 28863557 - 28863460
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| ||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32505648 - 32505749
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||   ||||||| |||||| |||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  114 ct 115  Q
    ||    
T  32505748 ct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 4060785 - 4060685
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||| ||| |||||||  | |  |||||||||||||||||||| |||||||||| ||||||| |||||||   ||||||| |||||| |||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 4060686  T
Q  114 c 114  Q
    |    
T  4060685 c 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 2533221 - 2533123
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||||||||||| || || || ||   ||||||||||||||||||||  ||||||| ||||||||||||| |||  |||||||| ||||||||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38732456 - 38732354
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||| ||| |||||||||||||||||  ||||||  ||||||||| ||| |||   ||| ||| ||||||||    
T  38732456 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataa 38732357  T
Q  112 ctc 114  Q
    |||    
T  38732356 ctc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40701580 - 40701478
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  40701580 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 40701481  T
Q  112 ctc 114  Q
    |||    
T  40701480 ctc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 41575240 - 41575142
Alignment:
Q  12 agagaaagtgtgcttgtgcagga-tccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    |||||||||||||||||| |||  |||| |||| ||| ||||| |||||||||||||||||||| | |||||| ||| ||||  |||||||| ||||||    
T  41575240 agagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcat 41575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 2997485 - 2997565
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||    
T  2997485 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 2997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 7465733 - 7465836
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||| ||||   ||||||| |||||| |    
T  7465733 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T
Q  112 ctct 115  Q
    ||||    
T  7465833 ctct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 20700917 - 20700810
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| || ||||  |||  |||||||||||||||||||    |||||| | ||||||||||| |||  |||||||| |||||| |    
T  20700917 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatta 20700818  T
Q  112 ctctttta 119  Q
    ||||||||    
T  20700817 ctctttta 20700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36168938 - 36168835
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||| ||||||||| || ||||| ||  ||||||||| |||||||||||   || ||| ||||||||| || ||||  |||||||| ||||||||    
T  36168938 agagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataa 36168839  T
Q  112 ctct 115  Q
    ||||    
T  36168838 ctct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 13365455 - 13365402
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 65  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||    
T  13365455 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtg 13365402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 30915565 - 30915461
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||| ||||   |||||| | |||||||||||||||   ||||||| |||||| |    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatta 30915466  T
Q  112 ctctt 116  Q
    |||||    
T  30915465 ctctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 38882846 - 38882916
Alignment:
Q  46 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 117  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||   ||||||| |||||| |||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactcttt 38882916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 43490219 - 43490121
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    ||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | ||||||| |||||||   ||| ||| |||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 17820039 - 17820104
Alignment:
Q  49 tgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    |||||||||||||||||  ||||||  | |||||||||||||| |  ||||||| |||||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3034981 - 3035033
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgt 64  Q
    ||||||||| | ||||||| || ||||||||| ||| ||||||||||||||||    
T  3034981 agagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3154245 - 3154193
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgt 64  Q
    ||||||| |||| ||| || |||||||| ||| ||||||||||||||||||||    
T  3154245 agagaaactgtgtttgggcgggatccatgtgaccacgtgtcagatttttgtgt 3154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 6679800 - 6679697
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| |||| |||||| || ||||| ||| |||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||| ||||||||    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  112 ctct 115  Q
    ||||    
T  6679700 ctct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 28177877 - 28177775
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||| ||| |||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 28177778  T
Q  112 ctc 114  Q
    |||    
T  28177777 ctc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 2740376 - 2740273
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T
Q  112 ctct 115  Q
    ||||    
T  2740276 ctct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 13811754 - 13811648
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| |||| | |    
T  13811754 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttta 13811655  T
Q  112 ctctttt 118  Q
    |||||||    
T  13811654 ctctttt 13811648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26720618 - 26720516
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||| ||  |||||||||||||||| |||   ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26720519  T
Q  112 ctc 114  Q
    |||    
T  26720518 ctc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26990367 - 26990265
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||| ||  |||||||||||||||| |||   ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26990268  T
Q  112 ctc 114  Q
    |||    
T  26990267 ctc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 35943890 - 35943992
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  |||||||  | |  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| ||||||||    
T  35943890 agagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataa 35943989  T
Q  112 ctc 114  Q
    |||    
T  35943990 ctc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 14831914 - 14831814
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||| ||||  ||||||| | ||||||||||||||| | ||||||| |||||| |||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 14831815  T
Q  114 c 114  Q
    |    
T  14831814 c 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15409608 - 15409712
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||| ||||||||||||| || ||||| ||   ||||||||||||||||||||  |||||||  |||||||| |||||||  |||||||| ||||||||    
T  15409608 agagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataa 15409707  T
Q  112 ctctt 116  Q
    |||||    
T  15409708 ctctt 15409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 2252166 - 2252269
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||  |||| ||| ||||||||    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  112 ctct 115  Q
    ||||    
T  2252266 ctct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 18520882 - 18520988
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T
Q  112 ctctttt 118  Q
     ||||||    
T  18520982 ttctttt 18520988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 35785301 - 35785199
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| |||||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  35785301 agagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 35785202  T
Q  112 ctc 114  Q
    |||    
T  35785201 ctc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40145509 - 40145407
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||| |||| ||| | |||||||||||||||   ||||||| |||||| |    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatta 40145410  T
Q  112 ctc 114  Q
    |||    
T  40145409 ctc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 3921263 - 3921368
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  3921263 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 3921362  T
Q  112 ctcttt 117  Q
    ||||||    
T  3921363 ctcttt 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 31009088 - 31008984
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  |||  ||  |||||||| |||||||  |||| ||| ||||||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  114 ctttt 118  Q
    |||||    
T  31008988 ctttt 31008984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 42414304 - 42414379
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    ||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | ||||||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 42414379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 33149636 - 33149738
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  |||||||| |||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 33149735  T
Q  112 ctc 114  Q
    |||    
T  33149736 ctc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 20073516 - 20073616
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    |||||||||||||||||||| ||||  || |||||||  |||||||| ||||| ||||||| | ||||||| || ||||  |||||||| |||||| |||    
T  20073516 agaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattact 20073615  T
Q  114 c 114  Q
    |    
T  20073616 c 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 36732940 - 36733044
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  | ||||||||||||||||||  ||||||| | |||||||| ||||||   ||||||| |||||| |    
T  36732940 agagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatta 36733039  T
Q  112 ctctt 116  Q
    |||||    
T  36733040 ctctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 39557515 - 39557594
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    |||||||||||| ||||   || ||||| ||||||||||||||||||||||||| |||| || || |||||| |||||||    
T  39557515 agagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 33825322 - 33825412
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctat 102  Q
    |||||||||||||||||| | | | || |||| |||||||||||||||| ||||  ||||||    ||||||||||||||| |||||||||    
T  33825322 agagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctat 33825412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 39688895 - 39688999
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||| ||| || | ||||||| ||| | |||||||||||||||  ||||||  ||||||||||||| |||   ||| ||| ||||||||    
T  39688895 agagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataa 39688994  T
Q  112 ctctt 116  Q
    |||||    
T  39688995 ctctt 39688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 41470448 - 41470517
Alignment:
Q  46 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||||||||||| | ||||| | ||| ||||||||||||||||||  ||||||| ||| || |||||    
T  41470448 acgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactct 41470517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 16327975 - 16327923
Alignment:
Q  40 atgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    |||| |||||||||||||||| ||||  ||||||  |||||||||||||||||    
T  16327975 atgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaa 16327923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 32813349 - 32813244
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||| |||||||||||||||||||||  ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 32813250  T
Q  112 ctcttt 117  Q
    ||||||    
T  32813249 ctcttt 32813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 27564733 - 27564835
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| |||||| |    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 27564832  T
Q  112 ctc 114  Q
    |||    
T  27564833 ctc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 51898683 - 51898784
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  114 ct 115  Q
    ||    
T  51898783 ct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 37926436 - 37926539
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||| | |||||||| ||  |||||||||||||||| ||||  ||| |||||||||||||||||||||| || ||||| ||||||||    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  112 ctct 115  Q
    ||||    
T  37926536 ctct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 8346386 - 8346492
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||||||||||| ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||||  || |||| |||||| |    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatta 8346485  T
Q  112 ctctttt 118  Q
    |||||||    
T  8346486 ctctttt 8346492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 49811525 - 49811629
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |  || |||||   |||||||||||||||||||| |||||||| | ||||||| |||||||  |||||||| ||||||||    
T  49811525 agagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataa 49811624  T
Q  112 ctctt 116  Q
    |||||    
T  49811625 ctctt 49811629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 5958998 - 5959104
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||| ||| |||||||||||||||||  |||||| || ||||||||||| |||   ||| ||| ||||||||    
T  5958998 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataa 5959097  T
Q  112 ctctttt 118  Q
    |||||||    
T  5959098 ctctttt 5959104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 44548374 - 44548471
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  | ||||| | |||||||||||||||| |||||||| ||||||    
T  44548374 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 37649297 - 37649193
Alignment:
Q  15 gaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    |||||||||||||||| | || ||  ||| |||||||||||||||||||||  |||||||   |||||||||||||||| |||||||| |||||| ||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T
Q  115 tttta 119  Q
     ||||    
T  37649197 attta 37649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 38632323 - 38632423
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||||||||||| || ||||  |||  |||||||||||||||||||| |||| ||||| |||||||||||||||   ||||||| |||||| |||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T
Q  116 t 116  Q
    |    
T  38632423 t 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 2582015 - 2581912
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  114 cttt 117  Q
    ||||    
T  2581915 cttt 2581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 38595256 - 38595150
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||||  ||| ||| |||||| |    
T  38595256 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatta 38595157  T
Q  112 ctctttt 118  Q
    |||||||    
T  38595156 ctctttt 38595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41608491 - 41608593
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||| | || ||||||||  ||| |||||||||||||||||| ||||||  | |||||||||||||||  |||| ||| ||||||||    
T  41608491 agagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 41608590  T
Q  112 ctc 114  Q
    |||    
T  41608591 ctc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 48716284 - 48716382
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    ||||||||||||||| || ||||  |||  |||||||||||||||||||| |||||||| | |||||||||||||||   ||||||| |||||| ||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 26440836 - 26440728
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| |||||||| ||  |||||||||||||||||||||  ||| ||| | ||||||| || ||||  |||||||| |||| |||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaa 26440737  T
Q  112 ctcttttaa 120  Q
    ||| |||||    
T  26440736 ctcatttaa 26440728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 43234 - 43132
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |  ||||  |||  ||||||||||||||||||||  ||||||| ||||||||| | ||||| | ||||||| |||||| |    
T  43234 agagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatta 43135  T
Q  112 ctc 114  Q
    |||    
T  43134 ctc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 9474874 - 9474976
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  9474874 agagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9474973  T
Q  112 ctc 114  Q
    |||    
T  9474974 ctc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 47452318 - 47452420
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  |||||| |||||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 47452417  T
Q  112 ctc 114  Q
    |||    
T  47452418 ctc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 50590998 - 50591100
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  50590998 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 50591097  T
Q  112 ctc 114  Q
    |||    
T  50591098 ctc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 26274530 - 26274437
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||| |||||||||||||||  |||  | ||||||||||||| |||| |||||||| ||||||||||||| |||   ||||||| ||||||    
T  26274530 aaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcat 26274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 44454077 - 44453980
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||  |||||||  | | ||| |||||||||||||||||  | |||| |||||||||||||| ||||  ||||||| ||||||||||    
T  44454077 aaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 3000421 - 3000341
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  3000421 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 3000341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 50630560 - 50630480
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |  |||| |||||||||||||||||    
T  50630560 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaa 50630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 41758907 - 41758832
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgcca 87  Q
    |||||||||||| |||||| || ||||| |||  ||||||||||||||||||||  ||||||| | ||||||||||    
T  41758907 agagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgcca 41758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 11152378 - 11152456
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    |||||| |||||||||| || || | ||||  |||||||||||||||||||| ||||| || | |||||||||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaa 11152456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 3302533 - 3302584
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 65  Q
    |||||||||||||||   || |||||||||| ||||||||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtg 3302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtc 71  Q
    ||||| ||||||||||| |||||||  ||| ||| ||||||||||||||||| |||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 23597122 - 23597194
Alignment:
Q  45 cacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 117  Q
    |||||||||||||||| ||||  | |||||   |||||||||||||||  |||||||| |||||| |||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactcttt 23597194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 19329944 - 19329842
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| |||||| |    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 19329845  T
Q  112 ctc 114  Q
    |||    
T  19329844 ctc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 3784097 - 3784000
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  |||||||||||||||||||||||||   ||||||| ||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 35522978 - 35522877
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||||||||  ||| ||| | ||||||||||| |||  |||||||| ||||||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataa 35522879  T
Q  112 ct 113  Q
    ||    
T  35522878 ct 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 7728006 - 7727902
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||| ||||||| || ||||||||| ||| |||||||||||| |||||||||||| || |||||| ||||||||   ||| ||| ||||||||||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  114 ctttt 118  Q
    |||||    
T  7727906 ctttt 7727902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 19436185 - 19436289
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| |||||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||  |||||||| |||||| |    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatta 19436284  T
Q  112 ctctt 116  Q
    |||||    
T  19436285 ctctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 3434664 - 3434561
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  ||||||||| ||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T
Q  112 ctct 115  Q
    ||||    
T  3434564 ctct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 3694469 - 3694389
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||  ||| ||||| ||||||| |||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaa 3694389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 22343463 - 22343360
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  112 ctct 115  Q
    ||||    
T  22343363 ctct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 36361911 - 36362014
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| |||||| |    
T  36361911 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T
Q  112 ctct 115  Q
    ||||    
T  36362011 ctct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 35468853 - 35468959
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| ||||||||| |||| ||| |||| | | |||||||| ||||  ||||||| |||||||||||| ||||  |||||||| |||||| |    
T  35468853 agagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcatta 35468952  T
Q  112 ctctttt 118  Q
    |||||||    
T  35468953 ctctttt 35468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 40957809 - 40957704
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| | |||||||  |||  ||||||||||||||||||||  | |||||   ||||||||||||||| | ||||||| |||||| |    
T  40957809 agagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatta 40957710  T
Q  112 ctcttt 117  Q
    ||||||    
T  40957709 ctcttt 40957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 7389491 - 7389387
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||||||   |||||||||||||||   ||||||| |||||| |    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 7389392  T
Q  112 ctctt 116  Q
    |||||    
T  7389391 ctctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 38044299 - 38044195
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||   || ||||||||||||||||| |||||||  | |||||||||||||||   ||| ||| ||||||||    
T  38044299 agagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 38044200  T
Q  112 ctctt 116  Q
    |||||    
T  38044199 ctctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 8238315 - 8238236
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    ||||||||||| ||||||| || |||||||||  || |||||||||||||||||  ||||||| | ||||||||||||||    
T  8238315 agagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 8238236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36362128 - 36362025
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| |||||||| ||||||||   ||||||| |||||| |    
T  36362128 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T
Q  112 ctct 115  Q
    ||||    
T  36362028 ctct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 41915843 - 41915732
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| ||||||||||||||||   ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  112 ctcttttaaaaa 123  Q
    |||| |||||||    
T  41915743 ctctattaaaaa 41915732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 21234503 - 21234401
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| ||||||||||| || | ||| ||   |||||||| |||||||||||| ||||||| | ||||||| |||||||  |||||||| ||||||||    
T  21234503 agagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataa 21234404  T
Q  112 ctc 114  Q
    |||    
T  21234403 ctc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 32564424 - 32564526
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||  |||||| || |||||||   ||| |||||||||||||||||  ||||||  | ||||||||||||||| ||||| ||| ||||||||    
T  32564424 agagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataa 32564523  T
Q  112 ctc 114  Q
    |||    
T  32564524 ctc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 35137635 - 35137533
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||||||||||||||   |||||||||||||| |    
T  35137635 agagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatta 35137536  T
Q  112 ctc 114  Q
    |||    
T  35137535 ctc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  20 tgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    ||||||||||| || ||||| ||  |||||||||||||||||||||  ||| ||| | ||| |||||||||||  |||||||| |||||||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 32951491 - 32951588
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 109  Q
    ||||||||||||||||||| || ||||  |||  |||||| ||||||||||||| |||| ||| ||||||||| || |||| | ||||||| ||||||    
T  32951491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 8080381 - 8080485
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||| |||   ||||||| | |||||||||||||||   ||||||| |||||| |    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 8080480  T
Q  112 ctctt 116  Q
    |||||    
T  8080481 ctctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 36208275 - 36208171
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| |||||||||||||| ||||  ||| ||| |||||| ||||||||||  ||||||   ||||||| ||||||||   ||||||| ||||||||    
T  36208275 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataa 36208176  T
Q  112 ctctt 116  Q
    |||||    
T  36208175 ctctt 36208171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 26296746 - 26296643
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| || |||||||| || ||||||||  ||||| |||||||||| |||| |||| ||| | | ||||| |||||||  |||||||| ||||||||    
T  26296746 agagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataa 26296647  T
Q  112 ctct 115  Q
    ||||    
T  26296646 ctct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 38837319 - 38837208
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||   |||  || | |||||||||||||||   ||||||| |||||| |    
T  38837319 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatta 38837220  T
Q  112 ctcttttaaaaa 123  Q
    ||||||| ||||    
T  38837219 ctcttttgaaaa 38837208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 40846111 - 40846218
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||  |||||| || ||||||| |  || ||| ||||||||||||| |||||||  | |||||||||||||||  |||| ||| ||||||||    
T  40846111 agagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 40846210  T
Q  112 ctctttta 119  Q
    ||| ||||    
T  40846211 ctccttta 40846218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 46033799 - 46033902
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| | ||||||||| |  | ||| ||| |||||||||||||||| ||||  ||| ||| | ||||||||||||||| ||| ||||| ||||||||    
T  46033799 agagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataa 46033898  T
Q  112 ctct 115  Q
    ||||    
T  46033899 ctct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 4999512 - 4999614
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| || ||||  |||  |||| |||||||||||||||  ||||||||| |||||||||| ||||   ||||||| |||||| |    
T  4999512 agagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 4999611  T
Q  112 ctc 114  Q
    |||    
T  4999612 ctc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38267142 - 38267040
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| ||| |||   ||||||| |||||| |    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatta 38267043  T
Q  112 ctc 114  Q
    |||    
T  38267042 ctc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 18207249 - 18207176
Alignment:
Q  45 cacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 118  Q
    ||||||| |||||||||| ||  |||||| || |||||||||||||||   ||||||| |||||||||||||||    
T  18207249 cacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctttt 18207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 16374822 - 16374894
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattg 84  Q
    |||||| |||||||||||   ||||||  ||| ||||||||||||||||||||| |||||||  |||||||||    
T  16374822 agagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 45223118 - 45223038
Alignment:
Q  38 atatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 118  Q
    ||||||| |||||||||||||||||||  ||||  ||  ||||||||||||||||  |||| ||| |||||| ||||||||    
T  45223118 atatgattacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctttt 45223038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41423784 - 41423682
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| | ||||||| | ||||| |  ||| ||| |||||||||||||||| | |||||| || |||||| ||| ||||  |||||||| ||||||||    
T  41423784 agagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataa 41423685  T
Q  112 ctc 114  Q
    |||    
T  41423684 ctc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 37038579 - 37038478
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  114 ct 115  Q
    ||    
T  37038479 ct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 32032826 - 32032724
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| |||||||||||||||||||  ||| ||||||||||||||||| ||||| || |||||||||||||||||   ||| ||| ||||||||    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtc-aaggatgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  112 ctct 115  Q
    ||||    
T  32032727 ctct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 5957932 - 5957826
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||| |||||| |||||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||| |    
T  5957932 agagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatta 5957833  T
Q  112 ctctttt 118  Q
    || ||||    
T  5957832 ctttttt 5957826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 43414579 - 43414681
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||  ||||||| | ||| |||||| ||||  |||||||| ||||||||    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataa 43414678  T
Q  112 ctc 114  Q
    |||    
T  43414679 ctc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 40423941 - 40424021
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || |||| ||||  |||||||||||||||||||| |||||||| | |||||||||||||||    
T  40423941 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaa 40424021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15048180 - 15048281
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||   ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  15048180 agagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtg-gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 15048278  T
Q  112 ctc 114  Q
    |||    
T  15048279 ctc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 15197435 - 15197333
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||| | ||||||| |||||| |    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 15197336  T
Q  112 ctc 114  Q
    |||    
T  15197335 ctc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 10621085 - 10621185
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| ||||| || ||   ||||||||||||||||||||  ||||||| | |||||| ||||||||  |||||||| ||||||||    
T  10621085 agagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataa 10621184  T
Q  112 c 112  Q
    |    
T  10621185 c 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 504119 - 504221
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||| |||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  504119 agagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 504218  T
Q  112 ctc 114  Q
    |||    
T  504219 ctc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 1179938 - 1180040
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| | ||||| ||||  ||||||||||||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  1179938 agagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 1180037  T
Q  112 ctc 114  Q
    |||    
T  1180038 ctc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 16056399 - 16056505
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  ||||||||| ||| |||  |||| ||| ||||||||    
T  16056399 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataa 16056498  T
Q  112 ctctttt 118  Q
    |||||||    
T  16056499 ctctttt 16056505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 16383479 - 16383373
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  16383479 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 16383380  T
Q  112 ctctttt 118  Q
    |||||||    
T  16383379 ctctttt 16383373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 14548024 - 14547944
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 14547944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 15258927 - 15259031
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||| |||||||||||||| ||||  ||| ||| |||||||||||| |||| ||||| |  |||||||||||| |||| | | ||||| ||||||||    
T  15258927 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataa 15259026  T
Q  112 ctctt 116  Q
    |||||    
T  15259027 ctctt 15259031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 24307791 - 24307895
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| | |||||||||||||||  ||||||  |||||||||||||||||   ||| ||| ||||||||    
T  24307791 agagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataa 24307890  T
Q  112 ctctt 116  Q
    |||||    
T  24307891 ctctt 24307895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 12831149 - 12831047
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| |    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 12831050  T
Q  112 ctc 114  Q
    |||    
T  12831049 ctc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 23122595 - 23122697
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||||||| |||   ||||||| |||||| |    
T  23122595 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatta 23122694  T
Q  112 ctc 114  Q
    |||    
T  23122695 ctc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 34012294 - 34012396
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  |||||||| |||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 34012393  T
Q  112 ctc 114  Q
    |||    
T  34012394 ctc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 4854861 - 4854965
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||||||||||| ||||| ||  ||| | |||||||||| |||   ||| ||| | |||||||||||||||  |||||||| |||||| |    
T  4854861 agagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcatta 4854960  T
Q  112 ctctt 116  Q
    |||||    
T  4854961 ctctt 4854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 34307318 - 34307214
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || | ||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  34307318 agagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 34307219  T
Q  112 ctctt 116  Q
    |||||    
T  34307218 ctctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 42221617 - 42221513
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    |||||||||||||||||   || |||||||||| ||||||||||||||||||||  |||| |   |||||||| |||||||  |||| ||| |||||| |    
T  42221617 agagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatta 42221518  T
Q  112 ctctt 116  Q
    |||||    
T  42221517 ctctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 30479472 - 30479574
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| |||||||  | |||||||   ||| |||||||||||| |||| |||||||| | |||||||||||||||   ||| ||| ||||||||    
T  30479472 agagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataa 30479571  T
Q  112 ctc 114  Q
    |||    
T  30479572 ctc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 10284629 - 10284734
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  |||||||| |||||||||||  |||||||   ||||||| ||| |||   ||||||| ||||||||    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataa 10284728  T
Q  112 ctcttt 117  Q
    ||||||    
T  10284729 ctcttt 10284734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 8841430 - 8841510
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||| ||||||||||    
T  8841430 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaa 8841510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 25838252 - 25838196
Alignment:
Q  59 ttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||| |||||||||  |||||||||||||||  || ||||||||||||||||||    
T  25838252 ttgtgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcataactct 25838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 24307692 - 24307625
Alignment:
Q  51 tcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 118  Q
    |||||||||||||||  ||||||  |||||||||||||||||   ||| ||| |||||||||||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctttt 24307625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 9122287 - 9122234
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 65  Q
    ||||||||||||||||||| |||||||  |||  || |||||||||||||||||    
T  9122287 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtg 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 10107 - 10218
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| |  | ||||  |||  ||||||||||||||| |||| |||||||| ||||||||||||||||||  ||||||| ||||||||    
T  10107 agagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataa 10206  T
Q  112 ctcttttaaaaa 123  Q
    ||||||| ||||    
T  10207 ctctttttaaaa 10218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41236449 - 41236347
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||| |||||||||| |||||||||||||||   ||||||| |||||| |    
T  41236449 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 41236350  T
Q  112 ctc 114  Q
    |||    
T  41236349 ctc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 50052426 - 50052532
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 50052525  T
Q  112 ctctttt 118  Q
    |||||||    
T  50052526 ctctttt 50052532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 50526171 - 50526271
Alignment:
Q  14 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 113  Q
    |||||| |||||||||| | |||||  ||| |||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 50526270  T
Q  114 c 114  Q
    |    
T  50526271 c 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 55475293 - 55475189
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||| |||||| ||||||||  ||| |||||||||||||||||  ||||||| | |||||||||||||||  |||| ||| ||||||||    
T  55475293 agagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataa 55475194  T
Q  112 ctctt 116  Q
    |||||    
T  55475193 ctctt 55475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 19670714 - 19670825
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||| ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  19670714 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 19670813  T
Q  112 ctcttttaaaaa 123  Q
    ||||||| ||||    
T  19670814 ctcttttcaaaa 19670825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 47986310 - 47986207
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || ||||||||  ||| ||||||||||||||||| |||||||  |||||||||||||||||   ||| ||| ||||||||    
T  47986310 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataa 47986211  T
Q  112 ctct 115  Q
    ||||    
T  47986210 ctct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 56300163 - 56300233
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtat 82  Q
    |||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  56300163 agagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaatgatgtat 56300233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 29547961 - 29548061
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 115  Q
    ||||||| ||| ||| |||||||||||  ||| |||||||||||||||||  ||||||  |||||||||||||||||  |||| ||| ||||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T
Q  116 t 116  Q
    |    
T  29548061 t 29548061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 32767060 - 32766956
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| |||||||||| ||||||||  ||| |||||||||||||| ||  ||||||  | ||||||||||||||| | ||| ||| ||||||||    
T  32767060 agagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataa 32766961  T
Q  112 ctctt 116  Q
    |||||    
T  32766960 ctctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 6034146 - 6034044
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||||||  |||  || |||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 6034047  T
Q  112 ctc 114  Q
    |||    
T  6034046 ctc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 42044365 - 42044471
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||  || |||||||||||||||||   ||||||| |||||| |    
T  42044365 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatta 42044464  T
Q  112 ctctttt 118  Q
    |||||||    
T  42044465 ctctttt 42044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 29239988 - 29239883
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  |||||| ||||||||||||| |||||||| | |||||||||||||||   ||||||| |||||| |    
T  29239988 agagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 29239889  T
Q  112 ctcttt 117  Q
    ||||||    
T  29239888 ctcttt 29239883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 48183047 - 48183151
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||| |||   ||||||| |||||| |    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatta 48183146  T
Q  112 ctctt 116  Q
    |||||    
T  48183147 ctctt 48183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40574881 - 40574779
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatca-cgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcata 110  Q
    ||||||||||||||||| | |||||||| | | || |||||||||||||||||||  ||||||| | |||||| ||||||||  |||||||| |||||||    
T  40574881 agagaaagtgtgcttgttcgggatccatgt-agcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcata 40574783  T
Q  111 actc 114  Q
    ||||    
T  40574782 actc 40574779  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 44536744 - 44536846
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||| ||  || || |||||| ||| ||||||||||||||||| ||||| || | ||||||||||||||||| ||| ||| ||||||||    
T  44536744 agagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcataa 44536842  T
Q  112 ctct 115  Q
    ||||    
T  44536843 ctct 44536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 50813890 - 50813993
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||| ||||||| || | ||||||| ||| |||||||||||||||||  ||||||  | |||||| |||||||| | ||| ||| ||||||||    
T  50813890 agagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataa 50813989  T
Q  112 ctct 115  Q
    ||||    
T  50813990 ctct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 480445 - 480551
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| |    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 480544  T
Q  112 ctctttt 118  Q
    |||||||    
T  480545 ctctttt 480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 11511460 - 11511562
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||| ||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11511559  T
Q  112 ctc 114  Q
    |||    
T  11511560 ctc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31910294 - 31910192
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| || ||||| ||   | ||||||||||||||||||  |||||||   ||||||| |||||||  |||||||| ||||||||    
T  31910294 agagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataa 31910195  T
Q  112 ctc 114  Q
    |||    
T  31910194 ctc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 17983741 - 17983821
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 92  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||    
T  17983741 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 17983821  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 29977987 - 29977908
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    ||||||||||||||||||  || |||||||||  ||||||||||||||||||||  ||| ||  | ||||||||||||||    
T  29977987 agagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 3481756 - 3481654
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||  || ||||  |||  | ||||||||||||||||||  |||||||   ||||||||||||||||  ||||||| |||||| |    
T  3481756 agagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatta 3481657  T
Q  112 ctc 114  Q
    |||    
T  3481656 ctc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8343161 - 8343263
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||| | ||| ||| || ||||||||  ||| |||||||||||| |||   ||||||| |||||||||||||||||  |||| ||| ||||||||    
T  8343161 agagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataa 8343260  T
Q  112 ctc 114  Q
    |||    
T  8343261 ctc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 41823984 - 41823931
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 65  Q
    ||||||||||||||||||| || ||||| |||  ||||||||||||||||||||    
T  41823984 agagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtg 41823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 54473535 - 54473633
Alignment:
Q  16 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 114  Q
    ||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| ||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||| ||  |||  ||||||||| |||||||||| |||| ||| | |||||||||||||||| |||||||| |||||| |    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  112 ctc 114  Q
    |||    
T  1027 ctc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||||||| |||| ||  |||  ||||||||| |||||||||| |||| ||| | |||||||||||||||| |||||||| |||||| |    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  112 ctc 114  Q
    |||    
T  1027 ctc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 4131 - 4029
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 111  Q
    ||||||||||||||| ||| |||||||  | |  ||||||||||||||||||||  ||| ||||| |||||||||| |||||  ||||||| |||||| |    
T  4131 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 4032  T
Q  112 ctc 114  Q
    |||    
T  4031 ctc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 152600 - 152523
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacc 89  Q
    |||||||||||  |||||| |||||||||||| ||| |||||||||||||||||  ||||||  | ||||||||||||    
T  152600 agagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacc 152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 17156 - 17077
Alignment:
Q  12 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 91  Q
    ||||||| ||||||||||| || ||||| ||| ||| ||||||||||||||||| ||||| |  |||||||||| |||||    
T  17156 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaaccta 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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