View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_22 (Length: 610)
Name: NF0928_low_22
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 59 - 599
Target Start/End: Original strand, 43092264 - 43092808
Alignment:
| Q |
59 |
tcataagttttatcttttttgatttatgtccctctattaaaagtaatttgaccggattagacccaaatcataagaagaacggattgcaagactggatcgt |
158 |
Q |
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| T |
43092264 |
tcataagttttatcttttttgatttatgtccctctattaaaagtaatttgaccggattagacccaaatcataaga---acggattgcaagactggatcgt |
43092360 |
T |
|
| Q |
159 |
gttttgaacaccctagttaattgttttggaagttttagggattaaaatcaaagtaatttattttgcaaggcctaaaatataattcagcnnnnnnnngttt |
258 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43092361 |
gttttgaacaccctagttaattgttttgggagttttagggattaaaatcaaagtaatttattttgcaaggcctaaaatataattcagcaaaaaaatattt |
43092460 |
T |
|
| Q |
259 |
ttgaagagtttagcggcaaaaccggcactaatacatggaagaagggtattacggagtcaaactagcactcggaatataaagtgttca-----------ta |
347 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43092461 |
tttaagagtttaacggcaaaaccggcactaatacatggaagaagggtattacggagtcaaactagcactcggaatataaagtgttcataaagtgttcgta |
43092560 |
T |
|
| Q |
348 |
taaatcttttaccaccaactaagttacaccagtcaaaaaatacttaagctaagaataagatatgtcggctttcagtcttctttgtgatnnnnnnntaaaa |
447 |
Q |
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||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
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| T |
43092561 |
taaatcttttaccaccacctaagttacacctgctaaaaaatacttaagctaagaataagatctgtcggctttcagtcttctttgtaataaaaaaataaaa |
43092660 |
T |
|
| Q |
448 |
taaataagaacttcatttaccacttagttaataacannnnnnnnnaaaggacttcgttaataacaattaacaccagtaccacnnnnnnnnnnnnnnnnnt |
547 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| | |
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| T |
43092661 |
taaataagaacttcatttaccacttagttaataacatttttttttaaagaacttcgttaataacaattaacaccagtaacac----aaaaaaaaaacaat |
43092756 |
T |
|
| Q |
548 |
taataccagtaaaaattaacattggattagataatgtccgctctcaccctat |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43092757 |
taataccagtaaaaattaacattggattagataatgtccgctctcacactat |
43092808 |
T |
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