View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_221 (Length: 259)
Name: NF0928_low_221
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_221 |
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| [»] chr4 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 55908096 - 55908325
Alignment:
| Q |
30 |
caaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatggg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908096 |
caaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatggg |
55908195 |
T |
|
| Q |
130 |
aggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908196 |
aggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggat |
55908295 |
T |
|
| Q |
230 |
cttcaaaatgccacgtttatgaatgatcac |
259 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
55908296 |
cttcaaaatgccacgtttatgaatgatcac |
55908325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 3438021 - 3438228
Alignment:
| Q |
33 |
acttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggagg |
132 |
Q |
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||||||||| || |||||||||| |||| || |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||||||||| ||||| |
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| T |
3438021 |
acttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatgtatcccggatgaattactttcctctattgcaattggagg |
3438120 |
T |
|
| Q |
133 |
tcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtc---gtatacaacatttggat |
229 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||| ||||| || ||| | ||| ||||||||||||||| ||||||||||||||||| |
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| T |
3438121 |
tcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtcaatgtatacaacatttggat |
3438220 |
T |
|
| Q |
230 |
cttcaaaa |
237 |
Q |
| |
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|||||||| |
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| T |
3438221 |
cttcaaaa |
3438228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 547639 - 547434
Alignment:
| Q |
38 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc |
137 |
Q |
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|||| ||||||| || ||||||| ||||||||||||||| |||| ||||| || ||||||||| ||||| | ||||||||||||| || | ||| |
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| T |
547639 |
attgactcgttgatgtgtttgaagggcttaacttgtcttgattttcggtcttcacgtatctcggatatgttgctctcctctattgcaatggaagctattc |
547540 |
T |
|
| Q |
138 |
ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtg---tcgtatacaacatttggatcttca |
234 |
Q |
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|
||||||||| ||||||||||||||||| |||||||| ||||| |||||||| | ||| || |||||||| | ||| |||||||| |||||||| |
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| T |
547539 |
ctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtccaagtgccaacatatccaacatttagatcttca |
547440 |
T |
|
| Q |
235 |
aaatgc |
240 |
Q |
| |
|
|||||| |
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| T |
547439 |
aaatgc |
547434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 21833760 - 21833929
Alignment:
| Q |
38 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc |
137 |
Q |
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|||||||| || ||||||||||| || || |||||||||| |||| |||||| |||| |||||| || || | |||||||||| || |||||||| |
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| T |
21833760 |
attggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaagggaaggtcttc |
21833859 |
T |
|
| Q |
138 |
ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaa |
207 |
Q |
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|||| | || |||||||| | ||| ||||||||||||| ||||| |||||| | | |||||||||||| |
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| T |
21833860 |
ctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaa |
21833929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 641574 - 641482
Alignment:
| Q |
116 |
tctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaag |
208 |
Q |
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|||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||| ||||| |||||| | | ||||||||||||| |
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| T |
641574 |
tctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaag |
641482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 6007054 - 6007006
Alignment:
| Q |
38 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgt |
86 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
6007054 |
attgactcgttggtgaaattgaaaggcttaacttgtcttgatttgtcgt |
6007006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 1037032 - 1037261
Alignment:
| Q |
30 |
caaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatggg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1037032 |
caaacttcattggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatggg |
1037131 |
T |
|
| Q |
130 |
aggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1037132 |
aggtcttcctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggat |
1037231 |
T |
|
| Q |
230 |
cttcaaaatgccacgtttatgaatgatcac |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
1037232 |
cttcaaaatgccacgtttatgaatgatcac |
1037261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 507 - 420
Alignment:
| Q |
162 |
attgcaccggctataattatgttggaatatactctttgttatccaagtgtcgtatacaacatttggatcttcaaaatgccacgtttatgaatgatca |
258 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
507 |
attgcaccggctataattatgctggaatctactctttgttatccaa---------acaacatttggatcttcaaaatgccatgtttatgaatgatca |
420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 17627437 - 17627631
Alignment:
| Q |
43 |
ctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttcctttg |
142 |
Q |
| |
|
|||| ||||||||||||| || ||||| |||| ||||| ||| |||||||||||| ||| || || | |||||||||||| | || | || ||||| |
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| T |
17627437 |
ctcgctggtgagtttgaaagggttaacaaatcttgatttgccgtttttgcgcatctcagatatgttcctctcttctattgcaattgaagttatttctttg |
17627536 |
T |
|
| Q |
143 |
agaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaagtgtc---gtatacaacatttggatcttca |
234 |
Q |
| |
|
||||| ||||||||| | |||||| ||||| |||| |||||||| ||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
17627537 |
agaaggcttgtcctcagagattgcattaactatagttattctggaatattttctttgttatccatgtgtcaatgtatccaacatttggatcttca |
17627631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 6436798 - 6436757
Alignment:
| Q |
192 |
actctttgttatccaagtgtc-gtatacaacatttggatctt |
232 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6436798 |
actctttgttatccaagtgtcagtatacaacatttggatctt |
6436757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 6403458 - 6403407
Alignment:
| Q |
184 |
tggaatatactctttgttatccaagtgt---cgtatacaacatttggatctt |
232 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
6403458 |
tggaatatactctctgttatccaagtgtagatgtatacaacatttggatctt |
6403407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 6594125 - 6594176
Alignment:
| Q |
184 |
tggaatatactctttgttatccaagtgtc---gtatacaacatttggatctt |
232 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6594125 |
tggaatgtactctttgttatccaagtgtcgatgtatacaacatttgaatctt |
6594176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 17352303 - 17352166
Alignment:
| Q |
102 |
atgaattgcttttttctattgcaatgggaggtcttcctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgtt |
201 |
Q |
| |
|
|||||||||| | |||||||||| || ||| ||||||| || ||||||||||| ||| ||| ||| ||||| | ||||| ||||| | |||||||| |
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| T |
17352303 |
atgaattgctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgtt |
17352204 |
T |
|
| Q |
202 |
atccaagtg---tcgtatacaacatttggatcttcaaa |
236 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||| |
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|
| T |
17352203 |
atccaagtgccaacgtatccaacattaggatcttcaaa |
17352166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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