View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_226 (Length: 256)
Name: NF0928_low_226
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_226 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 39280400 - 39280188
Alignment:
| Q |
1 |
ttcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttg |
100 |
Q |
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| T |
39280400 |
ttcaagagcagagaccagatacccctttttgcaaagcccatcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttg |
39280301 |
T |
|
| Q |
101 |
tacaaaagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgcttagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280300 |
tacaaaagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgcttagca |
39280201 |
T |
|
| Q |
201 |
tggcctttgcttc |
213 |
Q |
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||||| ||||||| |
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| T |
39280200 |
tggcccttgcttc |
39280188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 17349924 - 17350120
Alignment:
| Q |
1 |
ttcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttg |
100 |
Q |
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|||||||| |||||||| || |||||| |||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |
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| T |
17349924 |
ttcaagagcagagaccaaataccccttcttgcaaagtccatcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttgg |
17350023 |
T |
|
| Q |
101 |
tacaaaagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgctta |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
17350024 |
tacagaagatccttggcttcttcaaaccttccactagcaacatatccattaatcaatgtattataaagcacagtattagggttaggaatcttgctta |
17350120 |
T |
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