View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_230 (Length: 255)
Name: NF0928_low_230
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_230 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 42632288 - 42632062
Alignment:
| Q |
29 |
agaaaggccacatatcaaataaaaacttgttcaaccaatcaacctgatgaaacatgcaaatatcaataacacagtaaaatcatcaaaatttgaagttcag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42632288 |
agaaaggccacatatcaaataaaaacttgttcaaccaatcaacctgatgaaacatgcaaatatcaataacacagtaaaatcatcaaaatttgaagttcag |
42632189 |
T |
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| Q |
129 |
aacttataaacaaaatattgaaaaaacaaactaactctttcataatcaggtgtcttcacccagagaggaatctcaggcataagttcttgcaaagcaagtg |
228 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42632188 |
aacttataaacaaaatattgaaaaaaaaaactaactctttcataatcaggtgtcttcacccagagaggaatctcaggcataagttcttgcaaagcaagcg |
42632089 |
T |
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| Q |
229 |
ggcctaattcactaattggtctaacaa |
255 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42632088 |
ggcctaattcactaattggtctaacaa |
42632062 |
T |
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