View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_231 (Length: 255)

Name: NF0928_low_231
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_231
NF0928_low_231
[»] chr1 (3 HSPs)
chr1 (4-245)||(30506312-30506554)
chr1 (182-238)||(36775861-36775916)
chr1 (193-240)||(15492194-15492240)
[»] chr4 (3 HSPs)
chr4 (184-240)||(47158139-47158194)
chr4 (79-122)||(22305841-22305884)
chr4 (192-240)||(9713827-9713874)
[»] chr6 (1 HSPs)
chr6 (182-239)||(28981067-28981123)
[»] scaffold0603 (1 HSPs)
scaffold0603 (143-238)||(7568-7660)
[»] chr7 (1 HSPs)
chr7 (182-238)||(1749288-1749343)
[»] chr2 (1 HSPs)
chr2 (184-240)||(14955424-14955479)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 30506554 - 30506312
Alignment:
Q  4 aatatttattcgatacaagtactatttaaacacaccatatcannnnnnnngtctctaatatcgatcctagttgtttagtgagagaaactatattttttct 103  Q
    ||||||||||||| |||||||||||||||||| |||||||||          ||||||||| |||||||||||||||||||||||||||||||||| |||    
T  30506554 aatatttattcgacacaagtactatttaaacaaaccatatcatttttttc--ctctaatattgatcctagttgtttagtgagagaaactatattttctct 30506457  T
Q  104 ttaagttctatttgtcctttgttcatcgaaaatatgtggtttaggtcattttttgatctataatcac----taagccgcatttcttttttctctttcttt 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||    |||||||||||||||||||||||||||||    
T  30506456 ttaagttctatttgtcctttgttcattgaaaatatgtggtttaggtcattttttga-ctgtaatcactaagtaagccgcatttcttttttctctttcttt 30506358  T
Q  200 caattctaaatagatgatttacacatatatcaagttttttcctatg 245  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||    
T  30506357 caattctaaataggtgattttcacatatatcaagttttttcctatg 30506312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 36775916 - 36775861
Alignment:
Q  182 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 238  Q
    ||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  36775916 tcttttttccctttctttcaat-ctaaataaatgattttcacatacatcaagttttt 36775861  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 15492194 - 15492240
Alignment:
Q  193 tttctttcaattctaaatagatgatttacacatatatcaagttttttc 240  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  15492194 tttctttcaat-ctaaataaatgattttcacatatatcaagttttttc 15492240  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 47158139 - 47158194
Alignment:
Q  184 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 240  Q
    ||||||| ||||||||||||| ||||||  |||||| ||||||||||||||||||||    
T  47158139 ttttttcactttctttcaatt-taaataagtgatttccacatatatcaagttttttc 47158194  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 22305884 - 22305841
Alignment:
Q  79 tagtgagagaaactatattttttctttaagttctatttgtcctt 122  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||    
T  22305884 tagtgagagaaactatattttctctttaagttctctttttcctt 22305841  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 9713827 - 9713874
Alignment:
Q  192 ctttctttcaattctaaatagatgatttacacatatatcaagttttttc 240  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  9713827 ctttctttcaat-ctaaataagtgatttccacatatatcaagttttttc 9713874  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 28981067 - 28981123
Alignment:
Q  182 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagtttttt 239  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaat-ctaaataagtgatttccacatatatcaagtgtttt 28981123  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 7568 - 7660
Alignment:
Q  143 tttaggtcattttttgatctataatcactaagccgcatttcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 238  Q
    ||||||||||||||||| ||| ||||||| | | |||  ||||||  | ||||||||||||| ||||||  || ||| ||||||||||||||||||    
T  7568 tttaggtcattttttgacctagaatcactcatctgca--tcttttacccctttctttcaatt-taaataagtggttttcacatatatcaagttttt 7660  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 1749343 - 1749288
Alignment:
Q  182 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 238  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||||    
T  1749343 tcttttttccctttctttcaat-ctaaataagtgattttcacatacatcaagttttt 1749288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 14955424 - 14955479
Alignment:
Q  184 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 240  Q
    ||||| |||||||||||||| |||||||  |||||| |||||| |||||||||||||    
T  14955424 tttttcctctttctttcaat-ctaaataagtgatttccacatacatcaagttttttc 14955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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