View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_233 (Length: 254)
Name: NF0928_low_233
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_233 |
 | |
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| [»] scaffold0008 (1 HSPs) |
| | |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24318123 - 24317897
Alignment:
| Q |
1 |
ctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24318123 |
ctttagatctacttcttgctgaaattcgaggtatcccgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatc |
24318024 |
T |
|
| Q |
101 |
agttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaat |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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|
| T |
24318023 |
agttgctccagattatgttcttctgagtccttttaagttgccattgattatgtgcttttggttgattccatggttacct-tttcacacaataattgcatt |
24317925 |
T |
|
| Q |
201 |
ttcgagaaaaatttctttcaagaataat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
24317924 |
ttcgagaaaaatttctttcaagaataat |
24317897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 20550279 - 20550082
Alignment:
| Q |
12 |
cttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccag |
111 |
Q |
| |
|
|||||||||| ||||| ||||||| | |||||||||||| ||||||| |||| ||||||||||||| || ||||||| ||| || | || |||||| | |
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|
| T |
20550279 |
cttcttgctggaattcaaggtatcctggctctttctccagcttctccataaaagaactagtaaccttcacattctttaataactttaccaattgctcgaa |
20550180 |
T |
|
| Q |
112 |
attatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaatttcgagaaa |
209 |
Q |
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||| |||||||||| |||| || | | |||||| || ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
20550179 |
attttgttcttcggtctcctcatttggtaccattgtttatgtgcttttggttgagtccatggttacctatttcacacaataattgtaagttcgagaaa |
20550082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 24188001 - 24187914
Alignment:
| Q |
14 |
tcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatca |
101 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| |||| |||| ||||||| ||||||||||||| |||||||||||||| ||||||| |
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|
| T |
24188001 |
tcttgctgaaattcaaggtatcccggctctttttccaacttcttcacaaaagaactagtaaccttcaccttctttagtaatttgatca |
24187914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 24187873 - 24187816
Alignment:
| Q |
156 |
ttttggttgattccatggttacctatttcacacaataattgcaatttcgagaaaaatt |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24187873 |
ttttggttgattcaatggttacctatttcacacaataatttcaagttcgagaaaaatt |
24187816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 233435 - 233655
Alignment:
| Q |
8 |
tctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgct |
107 |
Q |
| |
|
|||||||| || || ||||||||||| | | ||||||| |||| |||||||||||| ||||||||||||| |||||||||| |||||| | || ||||| |
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|
| T |
233435 |
tctacttcatgatggaattcgaggtaccctggctctttcaccagcttctccacaaaagaactagtaaccttcaccttctttaataaatttaccaattgct |
233534 |
T |
|
| Q |
108 |
ccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaatttcgaga |
207 |
Q |
| |
|
||| ||| ||||||||| |||| ||| || ||||| |||||||||||| ||| | |||||| |||||||||||| ||||||||||||| ||||||| |
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|
| T |
233535 |
ccaaattttgttcttcgttctcctcattaaatgtcattgtttgtgtgcttttagttcagtccatgattacctatttcagacaataattgcaagttcgaga |
233634 |
T |
|
| Q |
208 |
aaaatttctttcaagaataat |
228 |
Q |
| |
|
||||||||| |||||||||| |
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|
| T |
233635 |
aaaatttctaacaagaataat |
233655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24537335 - 24537544
Alignment:
| Q |
1 |
ctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| | | ||||||||||| |||||||||||| || ||| ||||| |||||||| |||||| ||||| |
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|
| T |
24537335 |
ctttaaatctacttcttgctgaaattcaaggtaccctggctctttctccaacttctccacaaaagaagaagtcacctttaccttcttgagtaaagtgatc |
24537434 |
T |
|
| Q |
101 |
agttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaat |
200 |
Q |
| |
|
| |||||| ||||| || || || |||| || || || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24537435 |
acttgctctagattttgatcctccatctcctcttcagctgtcattgatcgtgtgtttttggttgattccatggttacctatttcacacaataattgcagg |
24537534 |
T |
|
| Q |
201 |
ttcgagaaaa |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
24537535 |
ttcgagaaaa |
24537544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 213
Target Start/End: Complemental strand, 26826066 - 26825908
Alignment:
| Q |
55 |
ctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtg |
154 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||| |||| ||||| || |||||||||||||| ||| || ||| ||||| | |||| |
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|
| T |
26826066 |
ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtc |
26825967 |
T |
|
| Q |
155 |
cttttggttgattccatggttacctatttcacacaataattgcaatttcgagaaaaatt |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26825966 |
cttttggttgattccattgttacctatttcacacaataattgcaacttcgaaaaaaatt |
26825908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 16230896 - 16230699
Alignment:
| Q |
31 |
gtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcc |
130 |
Q |
| |
|
|||||| | |||||||||||| || || |||||| ||||||||||||| |||||||||||||| || | || ||||||| ||| |||| |||| || |
|
|
| T |
16230896 |
gtatcatggctctttctccagcttttctacaaaagaactagtaaccttcaccttctttagtaactttaccaattgctcccaattttgtttttcgatctct |
16230797 |
T |
|
| Q |
131 |
tttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaatttcgagaaaaatttctttcaagaataat |
228 |
Q |
| |
|
| || |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
16230796 |
tcatttgttgccattgtctttgtgcttttggttgagtccatggttacctatttcacacaataattgcaagttcgagaaaaatttctgacaagaataat |
16230699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 3398652 - 3398581
Alignment:
| Q |
128 |
tcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaa |
199 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3398652 |
tcctctttagtttccattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaa |
3398581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 3387190 - 3387149
Alignment:
| Q |
169 |
catggttacctatttcacacaataattgcaatttcgagaaaa |
210 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3387190 |
catgattacctatttcacacaataatttcaaattcgagaaaa |
3387149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4967 - 4758
Alignment:
| Q |
1 |
ctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatc |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| || | || |||||||||||||| | | | |||| |
|
|
| T |
4967 |
ctttatatctacttcttgctaaaattcgaggtatcccgactctttttccagcttctccacaaaagaagtcgtcaccttaaccttcttgaatgaggagatc |
4868 |
T |
|
| Q |
101 |
agttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggttacctatttcacacaataattgcaat |
200 |
Q |
| |
|
| |||||| ||| |||||||| |||| |||||| | ||||| ||||| ||||||||||||||||| | || |||||||||| ||| |||||| |
|
|
| T |
4867 |
aagtgctcccaattttgttcttccatctcctctttagtagtcattgcttgtgcctttttggttgattccatgctaacatatttcacaccatagttgcaag |
4768 |
T |
|
| Q |
201 |
ttcgagaaaa |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
4767 |
ttcgagaaaa |
4758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 24253144 - 24253091
Alignment:
| Q |
157 |
tttggttgattccatggttacctatttcacacaataattgcaatttcgagaaaa |
210 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
24253144 |
tttggttgcttccatgattacctatttcacacaataatcacaagttcgagaaaa |
24253091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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