View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_237 (Length: 253)

Name: NF0928_low_237
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_237
NF0928_low_237
[»] chr8 (17 HSPs)
chr8 (1-142)||(40118098-40118239)
chr8 (18-158)||(38172754-38172899)
chr8 (15-123)||(13541421-13541530)
chr8 (15-123)||(13682943-13683052)
chr8 (15-154)||(38699721-38699860)
chr8 (39-153)||(18881850-18881965)
chr8 (15-154)||(43115191-43115330)
chr8 (15-102)||(4072236-4072323)
chr8 (15-102)||(41323190-41323277)
chr8 (15-102)||(21441602-21441689)
chr8 (15-150)||(41570409-41570544)
chr8 (47-157)||(12491566-12491678)
chr8 (189-243)||(38172699-38172753)
chr8 (39-153)||(1233564-1233675)
chr8 (39-153)||(13640920-13641031)
chr8 (25-54)||(18881806-18881835)
chr8 (55-92)||(33613707-33613744)
[»] chr7 (19 HSPs)
chr7 (2-157)||(34659348-34659505)
chr7 (15-152)||(758879-759016)
chr7 (15-132)||(37202791-37202909)
chr7 (15-152)||(46211636-46211773)
chr7 (15-154)||(29715802-29715941)
chr7 (15-154)||(48609062-48609201)
chr7 (15-102)||(39719929-39720016)
chr7 (47-157)||(13465458-13465570)
chr7 (47-157)||(28491315-28491427)
chr7 (15-152)||(83590-83728)
chr7 (39-152)||(20926818-20926929)
chr7 (83-154)||(25592168-25592240)
chr7 (1-51)||(14046995-14047046)
chr7 (98-157)||(14047068-14047127)
chr7 (1-51)||(14357025-14357076)
chr7 (98-157)||(14357098-14357157)
chr7 (80-154)||(37049140-37049214)
chr7 (47-132)||(25439574-25439658)
chr7 (15-51)||(25592125-25592161)
[»] chr4 (15 HSPs)
chr4 (18-157)||(52628265-52628409)
chr4 (1-123)||(54165954-54166079)
chr4 (15-123)||(8745701-8745810)
chr4 (25-153)||(21790752-21790882)
chr4 (15-102)||(43892531-43892618)
chr4 (15-123)||(48841154-48841261)
chr4 (47-154)||(6016799-6016907)
chr4 (15-154)||(48861977-48862116)
chr4 (47-153)||(2407155-2407263)
chr4 (47-154)||(22786028-22786136)
chr4 (189-243)||(52628411-52628465)
chr4 (189-243)||(54165869-54165923)
chr4 (17-153)||(17815943-17816074)
chr4 (77-150)||(42318962-42319035)
chr4 (198-253)||(11950664-11950720)
[»] scaffold0186 (1 HSPs)
scaffold0186 (15-153)||(22694-22833)
[»] chr5 (11 HSPs)
chr5 (1-154)||(16908611-16908765)
chr5 (15-123)||(34034073-34034182)
chr5 (15-154)||(17695867-17696006)
chr5 (15-102)||(13517548-13517635)
chr5 (15-102)||(17768985-17769072)
chr5 (15-153)||(41640026-41640164)
chr5 (4-103)||(19948859-19948958)
chr5 (47-154)||(40528147-40528255)
chr5 (1-61)||(22099212-22099273)
chr5 (39-151)||(14521642-14521753)
chr5 (15-153)||(40360995-40361132)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-141)||(428333-428464)
[»] chr1 (18 HSPs)
chr1 (15-154)||(11142660-11142799)
chr1 (15-102)||(1600595-1600682)
chr1 (15-123)||(44961438-44961547)
chr1 (15-154)||(10406145-10406284)
chr1 (15-154)||(19313369-19313508)
chr1 (15-153)||(10177885-10178023)
chr1 (15-102)||(15757726-15757813)
chr1 (58-158)||(33240845-33240946)
chr1 (47-157)||(30950794-30950906)
chr1 (15-102)||(10620113-10620200)
chr1 (15-154)||(23614619-23614758)
chr1 (47-154)||(29799042-29799150)
chr1 (1-50)||(33241370-33241420)
chr1 (39-153)||(46515604-46515716)
chr1 (25-103)||(47367859-47367937)
chr1 (39-152)||(21972427-21972538)
chr1 (16-62)||(52111063-52111109)
chr1 (64-150)||(28403123-28403210)
[»] chr6 (11 HSPs)
chr6 (15-152)||(29363504-29363641)
chr6 (10-149)||(29486438-29486577)
chr6 (47-157)||(1780628-1780740)
chr6 (15-92)||(34729825-34729902)
chr6 (25-130)||(24428798-24428907)
chr6 (39-152)||(904013-904124)
chr6 (83-154)||(22956432-22956504)
chr6 (15-51)||(22956511-22956547)
chr6 (15-51)||(23831845-23831881)
chr6 (83-154)||(23831888-23831960)
chr6 (39-153)||(8559901-8560013)
[»] scaffold0110 (1 HSPs)
scaffold0110 (18-102)||(6920-7004)
[»] chr3 (15 HSPs)
chr3 (15-154)||(17652944-17653083)
chr3 (15-102)||(21295982-21296069)
chr3 (15-102)||(46823854-46823941)
chr3 (47-157)||(40763813-40763925)
chr3 (15-154)||(16152280-16152419)
chr3 (17-153)||(29648391-29648530)
chr3 (47-157)||(3458062-3458173)
chr3 (47-154)||(20843176-20843284)
chr3 (15-83)||(11027911-11027979)
chr3 (39-153)||(35106481-35106593)
chr3 (10-51)||(38171425-38171466)
chr3 (15-51)||(11906662-11906698)
chr3 (83-154)||(52403266-52403338)
chr3 (15-51)||(52403345-52403381)
chr3 (39-153)||(19795621-19795732)
[»] chr2 (8 HSPs)
chr2 (25-131)||(42799168-42799275)
chr2 (47-157)||(16546354-16546466)
chr2 (47-157)||(39070180-39070292)
chr2 (15-153)||(4435242-4435380)
chr2 (47-154)||(45655935-45656043)
chr2 (16-75)||(38881702-38881761)
chr2 (15-63)||(26180642-26180690)
chr2 (47-132)||(37614591-37614680)
[»] scaffold0005 (1 HSPs)
scaffold0005 (15-154)||(292225-292364)
[»] scaffold0481 (1 HSPs)
scaffold0481 (15-118)||(6672-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (15-49)||(778-812)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 40118098 - 40118239
Alignment:
Q  1 aattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca 100  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40118098 aattatagaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatggacaatgaatttattgcaaataatctattagtttaca 40118197  T
Q  101 ttgaaaatatattattaatctatctagtaaacactcaattat 142  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  40118198 ttgaaaatatattattaatctacctagtaaacactcaattat 40118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 38172899 - 38172754
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||| ||||||    
T  38172899 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaatgagtttattgcaaataacctattagtttacattggagaatacattatt 38172800  T
Q  117 aatc----tatctagtaaacactcaattatagataaaattggtttt 158  Q
    ||||    ||| |||||||||||||||||| |||||||||||||||    
T  38172799 aatctatatatttagtaaacactcaattatggataaaattggtttt 38172754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 13541530 - 13541421
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13541530 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13541431  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  13541430 attaatctat 13541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 13682943 - 13683052
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13682943 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13683042  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  13683043 attaatctat 13683052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 38699860 - 38699721
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  38699860 ttttcaacaataaaaattatcaagacaatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacatt 38699761  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| || ||||| ||| |||||||    
T  38699760 attaatctat-tattaaacagtctattattgatgaaattgg 38699721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 18881850 - 18881965
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactca 137  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| | ||||||| |||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  138 attatagataaaattg 153  Q
    ||||| ||||||||||    
T  18881950 attatggataaaattg 18881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 43115191 - 43115330
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  | ||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  43115191 ttttcaacaataaaaattatcaagacaatagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacatt 43115290  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  43115291 attaatctat-tattaaacagtcaattattgatgaaattgg 43115330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 4072323 - 4072236
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  4072323 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 4072236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 41323277 - 41323190
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  41323277 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataaactatttatttacatt 41323190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 21441689 - 21441602
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21441689 ttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21441602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 41570409 - 41570544
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatatta 114  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||   ||||||||| |||||||||| ||||| |||||| || |||| | |  |    
T  41570409 ttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagtaatgagtttcttgcaaataacctatttgtttaccttaaaaaaacaaca 41570508  T
Q  115 ttaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||| | ||||||| |||||||| |||||||    
T  41570509 ttaatctattttgtaaacaatcaattatggataaaa 41570544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 12491566 - 12491678
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  145 ataaaattggttt 157  Q
    ||| |||||||||    
T  12491666 atacaattggttt 12491678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 38172753 - 38172699
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  38172753 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 38172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 1233675 - 1233564
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 1233579  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  1233578 ttatggataaaattg 1233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 13641031 - 13640920
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 13640935  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  13640934 ttatggataaaattg 13640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 18881806 - 18881835
Alignment:
Q  25 taaaaattatcaagacaatagtcataaaca 54  Q
    ||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaaca 18881835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 33613707 - 33613744
Alignment:
Q  55 aattaaatggacaatgagtttattgcaaataatctatt 92  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctatt 33613744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 34659348 - 34659505
Alignment:
Q  2 attatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca 100  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  34659348 attatagagaaaacttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttaca 34659447  T
Q  101 -ttgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
     || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34659448 tttaaaaatacattattaatctatttagtaaacactcaattatagataaaattggttt 34659505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 758879 - 759016
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||| ||||||| | |||    
T  758879 ttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataatctatttatttacatttgaaaagacatt 758978  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  758979 attaatctat-tattaaacaaacaattattgatgaaatt 759016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 37202791 - 37202909
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacat-tgaaaatatatt 113  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||  ||||| | |||    
T  37202791 ttttcaacattaaaagttattaagacaatagtcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacatt 37202890  T
Q  114 attaatctatctagtaaac 132  Q
    |||||||||| ||||||||    
T  37202891 attaatctatttagtaaac 37202909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 46211773 - 46211636
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  46211773 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 46211674  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  46211673 attaatctat-tattaaacaaacaattattgatgaaatt 46211636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 29715941 - 29715802
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||| |||||| |||||  |||||| ||||||| | |||    
T  29715941 ttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacatt 29715842  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| || ||||| ||| |||||||    
T  29715841 attaatctat-tattaaacagtctattattgatgaaattgg 29715802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 48609201 - 48609062
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  48609201 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaacacatt 48609102  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48609101 attaatctat-tattaaacaaacaattattgatgaaattgg 48609062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 39719929 - 39720016
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  39719929 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 39720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 13465458 - 13465570
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  13465558 ataaaattggttt 13465570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 28491315 - 28491427
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatcta-ttagtttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| ||| |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  28491415 ataaaattggttt 28491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 83728 - 83590
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatgg-acaatgagtttattgcaaataatctattagtttaca-ttgaaaatatat 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    ||||||||||| ||| |||||| |||||  |||||| ||||||| | ||    
T  83728 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagtttcttgtaaataacctatttatttacatttgaaaagacat 83629  T
Q  113 tattaatctatctagtaaacactcaattatagataaaatt 152  Q
    ||||||||||| || ||||||  ||||||| ||| |||||    
T  83628 tattaatctat-tattaaacaaacaattattgatgaaatt 83590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 20926929 - 20926818
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||  ||||||  | || ||||||||| |||| | |||| |||||||| || |||||| ||||    
T  20926929 acaatagtcataatcaaattaaaaggacaataagttt-ttcaaaataacttgtttgtttacatt-aaaaaacattaataatctatttattaaacagtcaa 20926832  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  20926831 ttatggataaaatt 20926818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 25592168 - 25592240
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 25592240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14046995 - 14047046
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14046995 aattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 14047068 - 14047127
Alignment:
Q  98 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14047068 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14357025 - 14357076
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14357025 aattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 14357098 - 14357157
Alignment:
Q  98 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14357098 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14357157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 37049140 - 37049214
Alignment:
Q  80 caaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    ||||||| ||||| |||||||||||||| | ||||||||||| | || |||||| | ||||| | ||||||||||    
T  37049140 caaataacctatttgtttacattgaaaagacattattaatctttttattaaacagttaattacaaataaaattgg 37049214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 25439658 - 25439574
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaac 132  Q
    ||||||||||||||||||||| ||||||| |||||   || ||||| | |||||||| ||||| | ||||||||||||| ||||||||    
T  25439658 cataaacaaattaaatggacattgagtttcttgca---aacctatttgttttacattggaaaagacattattaatctatttagtaaac 25439574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 25592125 - 25592161
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25592125 ttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 52628265 - 52628409
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattatt 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  52628265 tcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaatgagtttattgcaaataacctattagtttacattggaaaatatattatt 52628364  T
Q  117 aatc----tatctagtaaacactcaattatagataaaattggttt 157  Q
    ||||    ||| ||||||||||||||||||  |||||| ||||||    
T  52628365 aatctatatatttagtaaacactcaattatttataaaactggttt 52628409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 54166079 - 54165954
Alignment:
Q  1 aattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagttta 98  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  54166079 aattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaatgagtttattgcaaataacctattagttta 54165980  T
Q  99 cattg-aaaatatattattaatctat 123  Q
    ||||| |||||| |||||||||||||    
T  54165979 cattgaaaaatacattattaatctat 54165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 8745810 - 8745701
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || | ||||| |||||  |||||| ||||||| | |||    
T  8745810 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacatt 8745711  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  8745710 attaatctat 8745701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 21790752 - 21790882
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgag--tttattgcaaataatctattagtttacattgaaaatatattattaatcta 122  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||  ||| |||||||||| |||||  ||||| | ||||| | ||||||||||||    
T  21790752 taaaaattattaagactatagtcataaacaaataaaatggacaatgagttttttttgcaaataacctatttatttacttggaaaagacattattaatcta 21790851  T
Q  123 tctagtaaacactcaattatagataaaattg 153  Q
      ||||||||| |||||||| || |||||||    
T  21790852 gttagtaaacaatcaattatggacaaaattg 21790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 43892618 - 43892531
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||| |||||||||| |||||  ||||||||    
T  43892618 ttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgtgcaatgagtttcttgcaaataacctatttatttacatt 43892531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 48841154 - 48841261
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||| |||| |||| |||||||||| |||||  |||||| ||||||| | |||    
T  48841154 ttttcaacaataaaaattatcaagacaa--gtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacatt 48841251  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  48841252 attaatctat 48841261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 6016907 - 6016799
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||| ||| ||||||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  |||||||| ||    
T  6016907 cataaacaatttaaatgtacattgagtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgga 6016808  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  6016807 taaaattgg 6016799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 48861977 - 48862116
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  48861977 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 48862076  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48862077 attaatctat-tattaaacagacaattattgatgaaattgg 48862116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 2407155 - 2407263
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg--aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||||  |||| | ||||||||||||| ||||||||  |||||||| |    
T  2407155 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattg 2407254  T
Q  145 ataaaattg 153  Q
    |||||||||    
T  2407255 ataaaattg 2407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 22786028 - 22786136
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||  || ||||| ||    
T  22786028 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatgga 22786127  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  22786128 taaaattgg 22786136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 52628411 - 52628465
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  52628411 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 52628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 54165923 - 54165869
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||  |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  54165923 ttgaaatacattttgtccaacttttctaataactattgtcaatttttatcctttg 54165869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 17816074 - 17815943
Alignment:
Q  17 ttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa-taat---ctattagtttacattgaaaatatat 112  Q
    ||||||||||||||||||||||||| ||||         ||| ||||| |||||||||| ||||||| |||    ||||| ||||||||| |||| | ||    
T  17816074 ttcaacaataaaaattatcaagacagtagt---------attcaatgggcaatgagtttcttgcaaaataacttactatttgtttacattaaaaaaacat 17815984  T
Q  113 tattaatctatctagtaaacactcaattatagataaaattg 153  Q
    ||||||||||| | ||||||| |||| ||| ||||||||||    
T  17815983 tattaatctattttgtaaacaatcaactatggataaaattg 17815943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 42319035 - 42318962
Alignment:
Q  77 ttgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||||  ||||  ||||||||||||  ||||||||||||||| |||||||||   |||||| |||||||    
T  42319035 ttgcaaataacatatttatttacattgaaaggatattattaatctatttagtaaacataaaattatggataaaa 42318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 11950664 - 11950720
Alignment:
Q  198 attttgtcgaacttttctaa-tagctatcgtcaatttttatcctttgctactcctct 253  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| |||| |||| ||||    
T  11950664 attttgtccaacttttctaaatagctattgtcaatttttatcatttgttactgctct 11950720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 22694 - 22833
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatatt 113  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||| ||| |||||||||| ||||| ||||||||| ||||| | |||    
T  22694 ttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggcattgaatttcttgcaaataacctatttgtttacattggaaaaaacatt 22793  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| | ||||||| ||||||||  |||||||||    
T  22794 attaatctattttgtaaacaatcaattatgaataaaattg 22833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 16908765 - 16908611
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttac 99  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| || ||| ||| ||||| ||||||    
T  16908765 aattatagagaaaacttttcaacgataaaaattattaagacaatagttataaataaattaaatggacaat-agtttctttcaagtaacctatttgtttac 16908667  T
Q  100 attg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||| |||||| ||||    
T  16908666 attgaaaaatacattattaatctatttagtaaacagtcaattatggataaatttgg 16908611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 34034073 - 34034182
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  34034073 ttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagacatt 34034172  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  34034173 attaatctat 34034182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 17696006 - 17695867
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  17696006 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaaaacatt 17695907  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  17695906 attaatctat-tattaaacagtcaattattgatgaaattgg 17695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 13517548 - 13517635
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  13517548 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 13517635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 17769072 - 17768985
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  17769072 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 17768985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 41640164 - 41640026
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  41640164 ttttcaacaataaaaatgatcaagaaaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacatt 41640065  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || ||||||  ||||||| ||| ||||||    
T  41640064 attaatctat-tattaaacaagcaattattgatgaaattg 41640026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 19948958 - 19948859
Alignment:
Q  4 tatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg 103  Q
    |||||||||||   | |||||| |||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| | ||||||||||    
T  19948958 tatagaaaaaaaaattaacaattaaaattatcaagacaatagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacattg 19948859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 40528255 - 40528147
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    |||||||||||||| |||| | ||||||| || ||||||| ||||| |||||||||| |||| | |||||||||| || ||||||||  |||| ||||||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  40528155 taaaattgg 40528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22099212 - 22099273
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaa 61  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  22099212 aattatagagaaaacttttcaacaataaaagttatcaagacaatagtcataatcaaattaaa 22099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 14521642 - 14521753
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| | ||||| ||||  ||||||||||  | || |||||||||||||| | |||| |||| ||| || |||||| ||||    
T  14521642 acaatagttataaacaaattaaaagtacaataagttg-ttgcaaataacttgtttgtttacattgaaaaaacattaataatatatttattaaacagtcaa 14521740  T
Q  139 ttatagataaaat 151  Q
    |||| ||||||||    
T  14521741 ttatggataaaat 14521753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 40361132 - 40360995
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatatt 113  Q
    |||||||||| |||||||||||| | ||||||||   |||  |||||| |  ||||||||| |||||||||| ||||| ||||| ||   |||| | |||    
T  40361132 ttttcaacaacaaaaattatcaacaaaatagtcagggaca--ttaaataggaaatgagtttcttgcaaataacctatttgtttagatcataaaagacatt 40361035  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| | ||||||| |||||||| ||||||||||    
T  40361034 attaatctattttgtaaacagtcaattatggataaaattg 40360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 428464 - 428333
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaat 108  Q
    |||| ||||||||  |||||||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||| | ||||||| ||||||    
T  428464 aaaacttttcaacggtaaaaattattaagacaatagtaataaacaaattaaatggacaat-agtttcttacaaataatctatttgcttacattggaaaat 428366  T
Q  109 atattattaatctatctagtaaacactcaatta 141  Q
    | ||||||||||||| ||||||||| |||||||    
T  428365 acattattaatctatttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 11142660 - 11142799
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||| ||||| |||||  |||||| ||||||| | |||    
T  11142660 ttttcaacaataaaaattatcaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacatt 11142759  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| |||||||||||    
T  11142760 attaatctat-tattaaacagacaattattgataaaattgg 11142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 1600682 - 1600595
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  ||||||||    
T  1600682 ttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatt 1600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 44961438 - 44961547
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| | ||     
T  44961438 ttttcaacagtaaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatc 44961537  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  44961538 attaatctat 44961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 10406284 - 10406145
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatatt 113  Q
    ||||||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||||| |||||||||| |||||  |||||||| ||||| | |||    
T  10406284 ttttcaacaataataattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacatt 10406185  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  10406184 attaatctat-tattaaacagtcaattattgatgaaattgg 10406145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 19313369 - 19313508
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| || | ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  19313369 ttttcaacaataaaaattatcaaaacaatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacatt 19313468  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  19313469 attaatctat-tattaaacagtcaattattgatgaaattgg 19313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 10177885 - 10178023
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||  ||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  10177885 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacatt 10177984  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || |||||| |||||||| ||| ||||||    
T  10177985 attaatctat-tattaaacagtcaattattgatgaaattg 10178023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 15757726 - 15757813
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  15757726 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 15757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 33240946 - 33240845
Alignment:
Q  58 taaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattggtt 156  Q
    |||||||||| ||| ||||||| |||| | |||||||||||||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattggtt 33240847  T
Q  157 tt 158  Q
    ||    
T  33240846 tt 33240845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 30950906 - 30950794
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacattg-aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  30950806 ataaaattggttt 30950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 10620113 - 10620200
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||  ||||||||    
T  10620113 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgaaaataacctatttatttacatt 10620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 23614619 - 23614758
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  23614619 ttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 23614718  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  23614719 attaatctat-tattaaacagacaattattgatgaaattgg 23614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 29799150 - 29799042
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||||||||||||| | ||||||| || ||||||| ||||| ||||||||| | ||| | |||||||||| || |||||||   |||| ||||||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  29799050 taaaattgg 29799042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33241420 - 33241370
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcata 50  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  33241420 aattatagagaaaacttttcaacaataaaaattatcaagacaatagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 46515604 - 46515716
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||||||| || |||||| ||||    
T  46515604 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatctatttattaaacagtcaa 46515701  T
Q  139 ttatagataaaattg 153  Q
    | || ||||||||||    
T  46515702 tcatggataaaattg 46515716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 47367859 - 47367937
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg 103  Q
    |||||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||| |||| | ||||||||||    
T  47367859 taaaaattatcaaggcaatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtctaattgtttacattg 47367937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 21972427 - 21972538
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || | |||||||||||| | |||| |||||||| || |||||| ||||    
T  21972427 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgcttacattgaaaa-acattaataatctatttattaaacagtcaa 21972524  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  21972525 ttatggataaaatt 21972538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 52111109 - 52111063
Alignment:
Q  16 tttcaacaataaaaattatcaagacaatagtcataaacaaattaaat 62  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||    
T  52111109 tttcaacaataaaaattatcatgaaaataatcataaacaaattaaat 52111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 28403123 - 28403210
Alignment:
Q  64 gacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||||||  ||||||||| ||||| |||||||||| |||| | |||||| |||||| || |||||  ||||||||| ||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctatttaataaacggtcaattataaataaaa 28403210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 29363641 - 29363504
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  29363641 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 29363542  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  29363541 attaatctat-tattaaacaaacaattattgatgaaatt 29363504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 29486438 - 29486577
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaat 108  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||   |||||||| |||||    
T  29486438 aaaacttttcaagagtaaaaattattaagacaatagtcataaacaaattaattggacaat-agtttcttgcaaataacctattttcttacattgaaaaat 29486536  T
Q  109 atattattaatctatctagtaaacactcaattatagataaa 149  Q
    |||||| |||||||| ||||||||  |||||||| ||||||    
T  29486537 atattaataatctatttagtaaacggtcaattatggataaa 29486577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 1780740 - 1780628
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| | ||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  1780640 ataaaattggttt 1780628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 34729825 - 34729902
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 92  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||||||| |||||||||| |||||    
T  34729825 ttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgtacaatgagtttcttgcaaataacctatt 34729902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 24428798 - 24428907
Alignment:
Q  25 taaaaattatcaagacaatagtcataaaca---aattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatc 120  Q
    |||||||||| |||||||||||||||||||   ||||||||||||| ||||||| ||| |||||| ||||| ||| |||||| |||| | ||||||||||    
T  24428798 taaaaattattaagacaatagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatc 24428897  T
Q  121 tatctagtaa 130  Q
    ||| ||||||    
T  24428898 tatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 904124 - 904013
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||| ||| || |||||  ||||    
T  904124 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatttatttattaaacggtcaa 904027  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  904026 ttatggataaaatt 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 22956504 - 22956432
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 22956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 22956547 - 22956511
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22956547 ttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 23831845 - 23831881
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23831845 ttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 23831888 - 23831960
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 23831960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 8560013 - 8559901
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | |||||||| |||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  8560013 acaatagtgagaaacaaatgaaatagataataagttctttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 8559916  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  8559915 ttatggataaaattg 8559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 7004 - 6920
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  7004 tcaacaataaaaattatcaagacaatagtcataaacagattaaatgaacaataagtttattgcaaataacatattagtttacatt 6920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 17653083 - 17652944
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  17653083 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaagacatt 17652984  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  17652983 attaatctat-tattaaacaaacaattattgatgaaattgg 17652944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 21295982 - 21296069
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21295982 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21296069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 46823854 - 46823941
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  46823854 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 46823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 40763813 - 40763925
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  40763913 ataaaattggttt 40763925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 16152280 - 16152419
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  16152280 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 16152379  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  16152380 attaatctat-tattaaacagacaattattgatgaaattgg 16152419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 29648391 - 29648530
Alignment:
Q  17 ttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattat 115  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||| || | || ||||| |||| |||| | |||||    
T  29648391 ttcaacgatataaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattat 29648490  T
Q  116 taatctatctagtaaacactca--attatagataaaattg 153  Q
    |||| ||| ||||||||| |||  ||||| ||||||||||    
T  29648491 taatttatttagtaaacaatcaatattatggataaaattg 29648530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 3458173 - 3458062
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaa-aatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||||||||||||| | ||||||| ||||||||||  |||| ||||||| || | || | ||||||||| ||||||||||||  |||||||||||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  146 taaaattggttt 157  Q
    ||||||||||||    
T  3458073 taaaattggttt 3458062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 20843284 - 20843176
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| |||||||   || ||||| ||    
T  20843284 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatgga 20843185  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  20843184 taaaattgg 20843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11027979 - 11027911
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa 83  Q
    ||||||| || ||||||| ||||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  11027979 ttttcaaaaacaaaaattctcaagacaatagtcatggacaaattaaatgtacaatgagtttcttgcaaa 11027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 35106593 - 35106481
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| |||| | || ||  ||||||||||||| | |||| |||||||| || |||||| ||||    
T  35106593 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaattacctgtttctttacattgaaaa-acattaataatctatttattaaacagtcaa 35106496  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  35106495 ttatggataaaattg 35106481  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38171425 - 38171466
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  38171425 aaaacttttcaacaaaaaaaattatcaagacaatagtcataa 38171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 11906698 - 11906662
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11906698 ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 52403338 - 52403266
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 52403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 52403381 - 52403345
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  52403381 ttttcaacaataaaaactatcaagacaatagtcataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 19795621 - 19795732
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | |||||||| |||| || ||| ||||| || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  19795621 acaatagtgagaaacaaatgaaatagataataagttt-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 19795717  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  19795718 ttatggataaaattg 19795732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 42799275 - 42799168
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctat 123  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||| | |||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  124 ctagtaaa 131  Q
     |||||||    
T  42799175 ttagtaaa 42799168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 16546354 - 16546466
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| || ||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  16546454 ataaaattggttt 16546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 39070292 - 39070180
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagttt-acattg-aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    |||||| |||||||||||||| ||||||| |||||||||| ||||| |||| |||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  39070292 cataaataaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 39070193  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  39070192 ataaaattggttt 39070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 4435242 - 4435380
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||| |||||||||||||||| |||||||||||||| | || || |||||||||||||||| ||| |||||| |||||  |||||| ||||||| | |||    
T  4435242 tttttaacaataaaaattatctagacaatagtcatagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacatt 4435341  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || ||||||  ||||||| ||| ||||||    
T  4435342 attaatctat-tattaaacagacaattatggatgaaattg 4435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 45656043 - 45655935
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| | ||||||||| ||| ||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  ||||||||  |    
T  45656043 cataaacaattgaaatggacattgaatttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaa 45655944  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  45655943 taaaattgg 45655935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38881702 - 38881761
Alignment:
Q  16 tttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagttt 75  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||| |||||||||||    
T  38881702 tttcaacaataaaaattatcaagataatagtcatagataaattaaatgtacaatgagttt 38881761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 26180642 - 26180690
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatg 63  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  26180642 tttttaacaattaaaactatcaagacaatagtcataaacatattaaatg 26180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 37614591 - 37614680
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtt---tacatt-gaaaatatattattaatctatctagtaaac 132  Q
    |||||||||||||||| |||| ||| ||| |||||||||| ||||| |||   |||||| ||||| | ||||||||||||| ||||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaac 37614680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 292364 - 292225
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||| |||||  |||| | ||||||| | | |    
T  292364 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacact 292265  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  292264 attaatctat-tattaaacaggcaattattgatgaaattgg 292225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 6672 - 6773
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||   |||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||  |||||| ||||||| | |||    
T  6672 ttttcaacaataaaaatta---agacaatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacatt 6768  T
Q  114 attaa 118  Q
    |||||    
T  6769 attaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 778 - 812
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcat 49  Q
    |||||||||||||||||||||||||||||||||||    
T  778 ttttcaacaataaaaattatcaagacaatagtcat 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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