View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_24 (Length: 592)
Name: NF0928_low_24
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 142 - 581
Target Start/End: Complemental strand, 7458214 - 7457774
Alignment:
| Q |
142 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttaccacttttaatt |
241 |
Q |
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| T |
7458214 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttaccacttttaatt |
7458115 |
T |
|
| Q |
242 |
tgtctgtccttctaaaaagttctctctagctaatgtcttgagtt---tgattgattaatggtaagaacgtggaatcaattaatttgccacaaaaattgga |
338 |
Q |
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| T |
7458114 |
tgtctgtccttctaaaaagttctctctagctaatgtcttgagttatttgattgattaatggtaagaacgtggaatcaattaattggccacaaaaattgga |
7458015 |
T |
|
| Q |
339 |
agnnnnnnnnnngcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtc |
438 |
Q |
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| T |
7458014 |
agaaaaaaaa--gcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtc |
7457917 |
T |
|
| Q |
439 |
tagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttt |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7457916 |
tagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttt |
7457817 |
T |
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| Q |
539 |
ttctctttttaattctggtatctgttctatccacgctcttcat |
581 |
Q |
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| T |
7457816 |
ttctctttttaattctggtatctgttctatccacgctcttcat |
7457774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 373 - 492
Target Start/End: Complemental strand, 7442704 - 7442585
Alignment:
| Q |
373 |
tttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtctagtctttgtttgttcttgtaagcaattatcaaa |
472 |
Q |
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||||||| |||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
7442704 |
tttctcattccctaaccctaaccaatgagagacatctttttaatctgctctcactcaaatcaagtctagtctttctttcttcttgtaagcaatgatcaaa |
7442605 |
T |
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| Q |
473 |
attagcttatcttttagggt |
492 |
Q |
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| T |
7442604 |
attagcttatcttttagggt |
7442585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 142 - 300
Target Start/End: Complemental strand, 7443926 - 7443761
Alignment:
| Q |
142 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttca--atcttggacatgaaagaaataaagtgttaccacttttaa |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||| | ||||||||||| |
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| T |
7443926 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatattcagttcaatatcctggacaagaaagaaataaagtttgaccacttttaa |
7443827 |
T |
|
| Q |
240 |
tttgtctgtcctt-ct----aaaaagttctctctagctaatgtcttgagtttgattgattaatggt |
300 |
Q |
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| T |
7443826 |
tttgtctgtccttactaaacaaaaggttctctctatctaatgttttggacttgattgattaatggt |
7443761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 7458310 - 7458240
Alignment:
| Q |
28 |
cacaaacagcagaactaagcaacatgaaccgtcctctaactgcaatctgtgtcatccaacacctcttaaca |
98 |
Q |
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| T |
7458310 |
cacaaacagcagaactaagcaacatgaaccgtcctctaactgcaatctgtgtcatccaacacctcttaaca |
7458240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 569
Target Start/End: Complemental strand, 7441984 - 7441902
Alignment:
| Q |
486 |
ttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttttt--ctctttttaattctggtatctgttctatc |
569 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||| | ||||||||| |||||||| ||| |||||||||||||||| |
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| T |
7441984 |
ttagggttccctaaagagaccagggttgttggtgtttgcaga--aagacttttttccctcttttttatt-tggtatctgttctatc |
7441902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 7444031 - 7443970
Alignment:
| Q |
28 |
cacaaacagcagaactaagcaacatgaaccgtcctctaactgc-aatctgtgtcatccaaca |
88 |
Q |
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|||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
7444031 |
cacacacagcagcaccaagtaacatggaccgtcctctaactgcaaatctgtgtcatccaaca |
7443970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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