View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_245 (Length: 251)
Name: NF0928_low_245
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_245 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 6068087 - 6067907
Alignment:
| Q |
5 |
cattttcttagaatgcataaggctaatccattgaagtctttttcaacaggactaaatacaagtatacttaagcttcttcaacacaaggtttaactttttg |
104 |
Q |
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| T |
6068087 |
cattttcttagaatgcataaggctaatccattgaagtctttttcaacaggactaaatacaagtatacttaagcttcttcaacacaaggtttaactttttg |
6067988 |
T |
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| Q |
105 |
ttatagtattccttcatagcactaggactatatattaactctccactatatattcatcaatcaacattcagacacttataa |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
6067987 |
ttatagtattccttcatagcactaggactatatattaactctccaatatatactcatcaatcaacattcagacacttataa |
6067907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 6067886 - 6067852
Alignment:
| Q |
188 |
ttgtaacctcttgtgtttggtgtgcataatgataa |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6067886 |
ttgtaacctcttgtgtttggtgtgcataatgataa |
6067852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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