View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_253 (Length: 251)
Name: NF0928_low_253
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_253 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 42631626 - 42631534
Alignment:
| Q |
149 |
gttatatggtgaatatggcaagaaatggaactaagaaaattgtgagtggttatgaaagcgccaaaaccagaacatgacagacaccctcctatg |
241 |
Q |
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| T |
42631626 |
gttatatggtgaatatggcaagaaatggaactaagaaaattgtgagtggttatgaaagcgccaaaaccagaacatgacagacaccctcctatg |
42631534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42631776 - 42631704
Alignment:
| Q |
1 |
caatgaagaaattatggtttaacgtttgaaggataaggtttaacagtttccgacgcagtttaaggtggcgagg |
73 |
Q |
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| T |
42631776 |
caatgaagaaattatggtttaacgtttgaaggaaaaggtttaacagtttccgacgcagtttaaggtggcgagg |
42631704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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