View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_254 (Length: 251)
Name: NF0928_low_254
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_254 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 58 - 249
Target Start/End: Complemental strand, 2333121 - 2332933
Alignment:
| Q |
58 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacgtgttgttgtatcatgagagataactccaagcaaagaataaataactaaggtagagt |
157 |
Q |
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| T |
2333121 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacatgttgt---atcatgagagataactccaagcaaagaataaataaataaggtagagt |
2333025 |
T |
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| Q |
158 |
ggatcttcttgtggtaaacccctcttcggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaact |
249 |
Q |
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| T |
2333024 |
ggatcttcttgtggtaaacccctctacggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaact |
2332933 |
T |
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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 1261237 - 1261402
Alignment:
| Q |
88 |
tgttgctagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataactaaggt-agagtggatcttcttgtggtaaacccctctt |
183 |
Q |
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| T |
1261237 |
tgttgttagtaacttggttttgtatcattagagataatttctccatgcaaagaacaaataaataaggtgatagtggatctccttgtcgtaaacccctctt |
1261336 |
T |
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| Q |
184 |
cggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaact |
249 |
Q |
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| T |
1261337 |
tggtttgaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaact |
1261402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 15927 - 16086
Alignment:
| Q |
94 |
tagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataactaaggt-agagtggatcttcttgtggtaaacccctcttcggttt |
189 |
Q |
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| T |
15927 |
tagtaacttggttttgtatcattagagataatatctccatgcaaagaacaaataaataaggtgatagtggatctccttctcgtaaacccctctttggttt |
16026 |
T |
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| Q |
190 |
gaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaact |
249 |
Q |
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| T |
16027 |
gaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaact |
16086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 40644448 - 40644405
Alignment:
| Q |
172 |
taaacccctcttcggtttgaaactatcaagtttttcaccattcca |
216 |
Q |
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| T |
40644448 |
taaacccct-ttaggtttgaaactttcaagtttttcaccattcca |
40644405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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