View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_265 (Length: 250)
Name: NF0928_low_265
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_265 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 52423712 - 52423481
Alignment:
| Q |
16 |
attcaaagactctaaaacacaaatagtcagagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcatcaactgcct |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52423712 |
attcaaagactctaaaacacaaatagtcaaagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcaccaactgcct |
52423613 |
T |
|
| Q |
116 |
ctccttcacaatacgccacataattagcaaaaacacaccacacagagtcctaagactaaaactaacagtacaaggtccaggaaatgaggcatcaacagag |
215 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52423612 |
ctccttcacaatacgccacataattagcaaagacacaccacacagagtcctaagactaaaactaacagtacaaggtccacgaaatgaggcatcaacagag |
52423513 |
T |
|
| Q |
216 |
caaaaagccactgacctgaaaaataaactcca |
247 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
52423512 |
caaaaagccactcacctgaaaaataaactcca |
52423481 |
T |
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