View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_274 (Length: 238)

Name: NF0928_low_274
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_274
NF0928_low_274
[»] chr3 (8 HSPs)
chr3 (4-231)||(23139820-23140047)
chr3 (9-230)||(23148537-23148758)
chr3 (25-230)||(23038836-23039041)
chr3 (24-230)||(23035964-23036170)
chr3 (39-230)||(23145729-23145920)
chr3 (35-231)||(23024077-23024273)
chr3 (24-230)||(23016856-23017062)
chr3 (67-230)||(23032551-23032714)
[»] chr6 (1 HSPs)
chr6 (11-230)||(21779594-21779813)
[»] scaffold0554 (1 HSPs)
scaffold0554 (40-230)||(6754-6944)
[»] scaffold0059 (1 HSPs)
scaffold0059 (74-229)||(61997-62152)
[»] chr1 (2 HSPs)
chr1 (96-230)||(12609771-12609905)
chr1 (98-230)||(12636869-12637001)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 23139820 - 23140047
Alignment:
Q  4 actaacagtatcttctagttaagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaat 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23139820 actaacagtatcttctagttaagctcacatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaat 23139919  T
Q  104 tcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23139920 tcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaac 23140019  T
Q  204 caaatatgcttcctgggcatattcttcg 231  Q
    ||||||||||||||||||||||||||||    
T  23140020 caaatatgcttcctgggcatattcttcg 23140047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 23148537 - 23148758
Alignment:
Q  9 cagtatcttctagttaagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctc 108  Q
    |||| ||||||||| |||||||| | ||  ||||||||||| ||||||||||  |||||||||||||||||||||| ||||| | || ||||||||||||    
T  23148537 cagtttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatcttttctcctcaccgtgagtccaaattcctc 23148636  T
Q  109 ggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaat 208  Q
     |||||||||| |||||||| | | |||||||| ||||||||||| ||||||| | |||||||  |||| |||| || ||||| ||||||||||||||||    
T  23148637 agtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaat 23148736  T
Q  209 atgcttcctgggcatattcttc 230  Q
    ||||| ||||||||||||||||    
T  23148737 atgctccctgggcatattcttc 23148758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 23038836 - 23039041
Alignment:
Q  25 agctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattct 124  Q
    ||||||||||||   |||||||||| |||||||||  |||||||||||||||||||||||||||| || | |||| ||||| || ||||||||||| |||    
T  23038836 agctcatatgacttacaaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtct 23038935  T
Q  125 tcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcata 224  Q
    |||||||| |||||||| ||||||||||| ||||||| | |||||||  ||||||||| || ||||| | |||||||||||||| |||| ||||||||||    
T  23038936 tcacttctgattccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcata 23039035  T
Q  225 ttcttc 230  Q
    ||||||    
T  23039036 ttcttc 23039041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 23035964 - 23036170
Alignment:
Q  24 aagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattc 123  Q
    |||||||||||||| ||| ||||||| ||||| |||  ||||||||||| ||||| |||||||||| || | |||||||||| || ||||| ||||||||    
T  23035964 aagctcatatgacatgcagaggatgataaacagaagaaaacaataaaagttcatcctttcttctcattgtggctccaaattcgtcagtcatgtccaattc 23036063  T
Q  124 ttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcat 223  Q
    ||||||| | |||||||| ||||||||||| ||||||| | |||||||  | ||||||| ||  |||| |||||||||||||||| |||| |||||||||    
T  23036064 ttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcat 23036163  T
Q  224 attcttc 230  Q
    |||||||    
T  23036164 attcttc 23036170  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 230
Target Start/End: Original strand, 23145729 - 23145920
Alignment:
Q  39 gcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattcc 138  Q
    ||||||||| | ||||||||||  |||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |||||||| | | |||||    
T  23145729 gcaaaggattataaacaaaagggcacaataaaagatcatcttttcttctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattcc 23145828  T
Q  139 actcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttc 230  Q
    ||| ||||||||||| ||||||| | |||| ||  ||||||||  || ||||| |||| ||||||||||| |||| ||||| ||||||||||    
T  23145829 actaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttc 23145920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 23024077 - 23024273
Alignment:
Q  35 acaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaa 134  Q
    ||||||||| ||||| ||||| |||| |||||||| |||||||||||||| | ||||| ||  ||||||| ||| ||||| ||||||||||||||| | |    
T  23024077 acaggcaaatgatgataaacagaaggtaacaataatagatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttga 23024176  T
Q  135 ttccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcg 231  Q
    ||||| | |||||||||||||||||||   |||||||  |||||||||  | ||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  23024177 ttccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcg 23024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 23016856 - 23017062
Alignment:
Q  24 aagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattc 123  Q
    |||||||| |||||  |||||||||| ||||||||||||| | |||||| ||||||||||| |||| || ||||||||||| ||| ||||| |||| |||    
T  23016856 aagctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaattgctcagtcatgtccagttc 23016955  T
Q  124 ttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcat 223  Q
     |||| | | |||||||  ||||||||||| ||||||| | |||||||  | ||||||| ||||||||||||||||||||| ||| | || || ||||||    
T  23016956 gtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggcat 23017055  T
Q  224 attcttc 230  Q
    |||||||    
T  23017056 attcttc 23017062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 23032551 - 23032714
Alignment:
Q  67 taaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaac 166  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||||| || | |||| ||||||| ||||||   |||||| |||| ||||||| | ||    
T  23032551 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 23032650  T
Q  167 aacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttc 230  Q
    |||||  | || |||| || ||||| |||||||||||||||| | || ||||||||||||||||    
T  23032651 aacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttc 23032714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 21779594 - 21779813
Alignment:
Q  11 gtatcttctagttaagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcgg 110  Q
    ||||||||||| ||||||| |||||| || ||||||||| ||   ||||| |||| ||||||||| | ||||||| ||| || |||||| |||||||| |    
T  21779594 gtatcttctagctaagctcgtatgacggggaaaggatgataagataaaggtaacactaaaagatcgttttttcttttcattgtgactccgaattcctcag 21779693  T
Q  111 tcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatat 210  Q
    |||| ||||||||||||||| | || ||||| ||||||||||| ||||||| | |||||||  | |||||||||  ||||| |||||||||||||||| |    
T  21779694 tcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctcaatatttctcaaaccaaatgt 21779793  T
Q  211 gcttcctgggcatattcttc 230  Q
    ||| ||||||||||||||||    
T  21779794 gctccctgggcatattcttc 21779813  T

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Target: scaffold0554 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 6944 - 6754
Alignment:
Q  40 caaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattcca 139  Q
    |||||||||| ||||| | || |||||| |||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||||||||||| | ||||||    
T  6944 caaaggatgataaacagagggaaacaatgaaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattcca 6845  T
Q  140 ctcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttc 230  Q
    |  ||||||||||| ||||||| | |||||||  | ||||| | || |||||||||||||||||||||||| ||||||||||| |||||||    
T  6844 catggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttc 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 61997 - 62152
Alignment:
Q  74 tcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatg 173  Q
    |||||||||||| | ||||  |||||||||| ||| ||||| ||||| ||||||| | | |||||| | ||||||||||||||||| | | |||||||      
T  61997 tcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaaca 62096  T
Q  174 ttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattctt 229  Q
    ||||||| | || ||||| | |  ||||||||||| | || |||||||||||||||    
T  62097 ttgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctt 62152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 12609771 - 12609905
Alignment:
Q  96 ctccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatt 195  Q
    ||||||||| ||| ||||| || || || |||| | | |||||| | ||||||||||||||||| | | ||||||    |||||| | ||||||||||||    
T  12609771 ctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt 12609870  T
Q  196 tctcaaaccaaatatgcttcctgggcatattcttc 230  Q
    | ||||||||||| |||| ||||| ||||||||||    
T  12609871 tatcaaaccaaatgtgctacctggacatattcttc 12609905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 12636869 - 12637001
Alignment:
Q  98 ccaaattcctcggtcatatccaattcttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttc 197  Q
    ||||||| ||| ||||| ||||| || |||| | | |||||| | |||||| |||||||||| | | | |||||   |||||| | |||||||||||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  198 tcaaaccaaatatgcttcctgggcatattcttc 230  Q
    ||||||||||| || | ||||||||||||||||    
T  12636969 tcaaaccaaatgtgatgcctgggcatattcttc 12637001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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