View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_278 (Length: 228)

Name: NF0928_low_278
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_278
NF0928_low_278
[»] chr1 (5 HSPs)
chr1 (32-228)||(29443653-29443849)
chr1 (24-176)||(29422909-29423052)
chr1 (19-228)||(29453636-29453836)
chr1 (19-155)||(29468200-29468316)
chr1 (192-228)||(29468112-29468148)
[»] chr2 (23 HSPs)
chr2 (44-188)||(12012927-12013063)
chr2 (19-188)||(11987865-11988026)
chr2 (19-188)||(12019266-12019425)
chr2 (48-201)||(9315639-9315784)
chr2 (19-107)||(9066084-9066172)
chr2 (107-228)||(9284543-9284665)
chr2 (107-228)||(9294993-9295115)
chr2 (19-201)||(9320566-9320736)
chr2 (19-107)||(9291533-9291617)
chr2 (21-170)||(9364210-9364351)
chr2 (107-201)||(9328262-9328355)
chr2 (107-228)||(10371511-10371629)
chr2 (19-107)||(12006544-12006634)
chr2 (133-228)||(10347462-10347556)
chr2 (44-163)||(8573931-8574044)
chr2 (44-107)||(10352726-10352789)
chr2 (151-188)||(12006496-12006533)
chr2 (107-201)||(9061545-9061636)
chr2 (34-107)||(10335412-10335485)
chr2 (20-107)||(9274161-9274241)
chr2 (44-83)||(9328216-9328255)
chr2 (19-85)||(10347365-10347430)
chr2 (160-224)||(10335584-10335647)
[»] chr3 (1 HSPs)
chr3 (18-170)||(37462064-37462205)
[»] scaffold0667 (1 HSPs)
scaffold0667 (44-199)||(4061-4208)
[»] chr8 (1 HSPs)
chr8 (45-228)||(41967073-41967247)
[»] chr4 (1 HSPs)
chr4 (44-107)||(26574512-26574575)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 29443849 - 29443653
Alignment:
Q  32 tgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  29443849 tgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacat 29443750  T
Q  132 ggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443749 ggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctctt 29443653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 29422909 - 29423052
Alignment:
Q  24 acacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgacct 123  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||       |||||||||||||||||    
T  29422909 acacacaatgtcaaatacatatacataaacaaaggtagagacttcaaaataattagagaatcattgtcatataata-------agaattcaatttgacct 29423001  T
Q  124 tttaacatggagtttaactagatatatcatatgatgggtccattgaattgata 176  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  29423002 tttaaca--gagtttaactagatatatcatatgatcggtccattgaattgata 29423052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 29453836 - 29453636
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 118  Q
    |||||||||||||||||  ||| | ||||||||||  |||||||||||||||| ||||||||||||  |||| |||| |||||||||||       ||||    
T  29453836 agcatacacacattgtcggatagatatacataaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattca-------attt 29453744  T
Q  119 gaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagt 218  Q
       ||||||||||  |||||||||  |||||||||||||||| || |||||| ||| ||||||||||||| || |||||||||| |||| |||||| |||    
T  29453743 a--cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagt 29453646  T
Q  219 accttctctt 228  Q
    ||||||||||    
T  29453645 accttctctt 29453636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 29468316 - 29468200
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 118  Q
    |||||||||||||||||||||||| ||||||||||||||            ||||||||||||||| |||||||||| |||       ||||||||||||    
T  29468316 agcatacacacattgtcaaatacatatacataaacaaag-----------taaataattagagaatcattgtcctataata-------agaattcaattt 29468235  T
Q  119 gaccttttaacatggagtttaactagatatatcatat 155  Q
    ||||||||||||  ||||||||||  |||||||||||    
T  29468234 gaccttttaaca--gagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 29468148 - 29468112
Alignment:
Q  192 aaaaaactcaggtaatcaataagaagtaccttctctt 228  Q
    |||||||||||  ||||||||||||||||||||||||    
T  29468148 aaaaaactcagacaatcaataagaagtaccttctctt 29468112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 12013063 - 12012927
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 143  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||       ||||||||||| |||||||||| ||||||    
T  12013063 atacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca-------atttgaccttt-aacatggagtctaacta 12012972  T
Q  144 gatatatcatatgatgggtccattgaattgatattaacttataca 188  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  12012971 catatatcatatgatgggtccattgaattgatattaacttataca 12012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 11988026 - 11987865
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 118  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||  ||||||||| ||| |||||||       ||||    
T  11988026 agcatacagacattgtcaaatatatatacataaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattca-------attt 11987934  T
Q  119 gaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttataca 188  Q
    ||||||| |||||  |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  11987933 gaccttt-aacataaagtttaactacatatatcacatgatgggtccattgaattgatattaacttataca 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 12019425 - 12019266
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||  ||| ||        
T  12019425 agcatacacacattgtcaaatacatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattc-caataca---- 12019331  T
Q  119 gaccttttaacatggagtttaactagatatatcatatgatgggtccattgaatt-gatattaacttataca 188  Q
          ||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  12019330 ------ttaacatagagtttaactacatatatcatatgatgggtccattgaattggatgttaacttataca 12019266  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 9315639 - 9315784
Alignment:
Q  48 ataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagata 147  Q
    ||||||||||||||||| || ||| ||||||| ||||  ||||||||| |||||||||||       ||||||||||| | ||| |||||||||||  ||    
T  9315639 ataaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattca-------atttgaccttt-agcatagagtttaactactta 9315730  T
Q  148 tatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 201  Q
    ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||    
T  9315731 tatcatatgatgggtccattgaactgacattaacttatacatagcaaaaactca 9315784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 9066172 - 9066084
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||  || ||||||||||||| ||||    
T  9066172 agcatacacacattgtcaaatacatgtacataaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttca 9066084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 9284665 - 9284543
Alignment:
Q  107 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaag-aaaaaactcaggta 205  Q
    ||||||||||||||||||| || ||  |||||||||| ||| || |||||||||||||||| || | | |||||||||||||||| ||||||||||| ||    
T  9284665 agaattcaatttgaccttt-aatataaagtttaactacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagata 9284567  T
Q  206 atcaat-aagaagtaccttctctt 228  Q
    |||||| |||||||||||||||||    
T  9284566 atcaataaagaagtaccttctctt 9284543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 9295115 - 9294993
Alignment:
Q  107 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaag-aaaaaactcaggta 205  Q
    ||||||||||||||||||| | ||| ||||||||| | ||| || |||||||||||||||| || | | |||||||||||||||| ||||||||||| ||    
T  9295115 agaattcaatttgaccttt-agcatagagtttaaccacataaattatatgatgggtccattaaactaaaattaacttatacaaagcaaaaaactcagata 9295017  T
Q  206 atcaat-aagaagtaccttctctt 228  Q
    |||||| |||||||||||||||||    
T  9295016 atcaataaagaagtaccttctctt 9294993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 9320566 - 9320736
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaattt 118  Q
    |||||||||||||||||| |||    ||| ||||||||||||||||||||||| ||||||||| ||  |||||| || |||| ||||||       ||||    
T  9320566 agcatacacacattgtcacata----tacgtaaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattca-------attt 9320654  T
Q  119 gaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 201  Q
    ||||| | | ||| ||||||||||  |||||||||||||||||||||||||||||| || |||| ||||| || |||||||||    
T  9320655 gacctat-agcatagagtttaacttaatatatcatatgatgggtccattgaattgacatcaactaatacatagcaaaaactca 9320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 9291533 - 9291617
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    |||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||    
T  9291533 agcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattca 9291617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 9364210 - 9364351
Alignment:
Q  21 catacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttga 120  Q
    |||||||||||  ||| ||||| ||||||||||||||||| |||||||||| |||||||||| |  ||||||||| |||       ||||||| ||||||    
T  9364210 catacacacatgctcagatacatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataata-------agaattccatttga 9364302  T
Q  121 ccttttaacatggagtttaactagatatatcatatgatgggtccattgaa 170  Q
    || ||||| || |||||||| || |||||||||||||||||| |||||||    
T  9364303 cc-tttaatatagagtttaagtacatatatcatatgatgggttcattgaa 9364351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 9328262 - 9328355
Alignment:
Q  107 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 201  Q
    ||||||||||||||||||| | ||| ||||||||||  ||||||||||||| |||||||||||||||| || |||||||||| || |||||||||    
T  9328262 agaattcaatttgaccttt-agcatagagtttaacttcatatatcatatgacgggtccattgaattgacatcaacttatacatagcaaaaactca 9328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 10371511 - 10371629
Alignment:
Q  107 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaa 206  Q
    ||||||||||||||||||| ||||  ||||||||||  |||||| ||||||||| ||||||||| ||||||||||||||||| |  |||||||||| |||    
T  10371511 agaattcaatttgaccttt-aacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaactcagttaa 10371609  T
Q  207 tcaataagaagtaccttctctt 228  Q
      || || ||||||||||||||    
T  10371610 --aacaataagtaccttctctt 10371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 12006634 - 12006544
Alignment:
Q  19 agcatacacacattgtcaaatac--acatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    ||||||||||||  |||||||||  | |||||||||||||||||||||||||||| ||||||||||||  ||||||||  |||||||||||    
T  12006634 agcatacacacagagtcaaatacttatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattca 12006544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 10347462 - 10347556
Alignment:
Q  133 gagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctctt 228  Q
    ||||||||||  |||||| |||||||  |||||||||| |||||| |||||||||| |  |||||||||| ||| |||||||||||||||||||||    
T  10347462 gagtttaactgcatatatgatatgataagtccattgaactgatat-aacttatacacaacaaaaactcagttaaacaataagaagtaccttctctt 10347556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 8574044 - 8573931
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 143  Q
    ||||||||||||||||| | |||||||| ||||||||||||  ||||||||||  |     | |||||| ||||||||| |||| ||| ||||||||| |    
T  8574044 atacataaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtga-----taagaatttaatttgacc-tttagcatagagtttaacca 8573951  T
Q  144 gatatatcatatgatgggtc 163  Q
     |||||||||||||||||||    
T  8573950 catatatcatatgatgggtc 8573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 10352726 - 10352789
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    ||||||||||||||||| |||| ||||| ||||||||||||  || ||||||||||||||||||    
T  10352726 atacataaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattca 10352789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 12006533 - 12006496
Alignment:
Q  151 catatgatgggtccattgaattgatattaacttataca 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12006533 catatgatgggtccattgaattgatattaacttataca 12006496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 9061636 - 9061545
Alignment:
Q  107 agaattcaatttgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactca 201  Q
    |||||||||||| |||||| | ||| ||||||||||| |||||| |||||||||  |||||||| ||| || |||||||||| || |||||||||    
T  9061636 agaattcaatttaaccttt-agcatagagtttaactacatatattatatgatgg--ccattgaactgacatcaacttatacatagcaaaaactca 9061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 10335412 - 10335485
Alignment:
Q  34 tcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    ||||||||| |||||||||||||||||  |||| || | ||||||||||||  |  ||||||||||||||||||    
T  10335412 tcaaatacatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattca 10335485  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 9274161 - 9274241
Alignment:
Q  20 gcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    ||||||||||||||||| |||    ||||||||||||||||||   |||||| ||||||| ||||  ||||||||| |||||||||||    
T  9274161 gcatacacacattgtcacata----tacataaacaaaggtaga---ttcaaagtaattagtgaatccttgtcctataataagaattca 9274241  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 9328216 - 9328255
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaa 83  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  9328216 atacgtaaacaaaggtagagacttcaaagtaattagagaa 9328255  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 10347365 - 10347430
Alignment:
Q  19 agcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaata 85  Q
    |||||| | ||||||||||||||| | |||||||| |||||| |||||||||| |||||||| ||||    
T  10347365 agcatatagacattgtcaaatacataaacataaac-aaggtaaagacttcaaagtaattagaaaata 10347430  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 10335584 - 10335647
Alignment:
Q  160 ggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttc 224  Q
    ||||||||||| |||||| |||||||||| |  ||||||||||  || |||||||||||||||||    
T  10335584 ggtccattgaactgatat-aacttatacacaacaaaaactcagtcaaacaataagaagtaccttc 10335647  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 37462064 - 37462205
Alignment:
Q  18 tagcatacacacattgtcaaatacacatacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatt 117  Q
    ||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||||||  ||||||||| | |       |||||||||||    
T  37462064 tagcatacacacattgtcacata----tacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataaca-------agaattcaatt 37462152  T
Q  118 tgaccttttaacatggagtttaactagatatatcatatgatgggtccattgaa 170  Q
    |||||||||| ||| ||  ||||||| ||||||||||||||||||||| ||||    
T  37462153 tgaccttttagcatagaacttaactacatatatcatatgatgggtccaatgaa 37462205  T

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Target: scaffold0667 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 4061 - 4208
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 143  Q
    ||||||||||||||||||||| |||||| |||||| |||||  || |||||| |||||||||||       ||||||  ||||| ||  |||||||||||    
T  4061 atacataaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattca-------atttgag-ttttagcacagagtttaacta 4152  T
Q  144 gatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaact 199  Q
     ||| ||||||||||||||||||||||  |||||||||||||||| || |||||||    
T  4153 aataaatcatatgatgggtccattgaacagatattaacttatacacagcaaaaact 4208  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 228
Target Start/End: Complemental strand, 41967247 - 41967073
Alignment:
Q  45 tacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactag 144  Q
    |||||||||||||||| || |||| || ||||||||||||| || |||||| |||||||       |||||||| ||| |||||||| |||||||| ||     
T  41967247 tacataaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaa-------ttcaatttaacc-tttaacatagagtttaagtac 41967156  T
Q  145 atatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctctt 228  Q
    || |||  |||||||||||||||| | | ||  |||| ||||||||| |||| || || |||| || |||||||||||||||||    
T  41967155 atgtattgtatgatgggtccattgcactaat-ctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctctt 41967073  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 26574512 - 26574575
Alignment:
Q  44 atacataaacaaaggtagagacttcaaaataattagagaataattgtcctatgataagaattca 107  Q
    |||||||||||| |||| |||| ||||| ||||||||||||  || ||||||||||||||||||    
T  26574512 atacataaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattca 26574575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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