View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_28 (Length: 561)

Name: NF0928_low_28
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_28
NF0928_low_28
[»] chr6 (6 HSPs)
chr6 (29-544)||(5542409-5542924)
chr6 (290-412)||(15605885-15606007)
chr6 (268-349)||(22534535-22534616)
chr6 (284-364)||(11731554-11731634)
chr6 (292-364)||(34104358-34104430)
chr6 (327-412)||(14680336-14680421)
[»] chr3 (11 HSPs)
chr3 (265-414)||(49525060-49525209)
chr3 (232-364)||(18720861-18720993)
chr3 (292-362)||(26046912-26046982)
chr3 (292-412)||(27608796-27608916)
chr3 (292-364)||(34497265-34497337)
chr3 (292-412)||(42340170-42340290)
chr3 (265-308)||(1834414-1834457)
chr3 (327-366)||(2121301-2121340)
chr3 (292-364)||(2615705-2615777)
chr3 (292-356)||(53497262-53497326)
chr3 (328-364)||(55199733-55199769)
[»] scaffold0252 (1 HSPs)
scaffold0252 (265-414)||(13293-13440)
[»] chr7 (11 HSPs)
chr7 (268-364)||(28598099-28598195)
chr7 (268-397)||(6056246-6056375)
chr7 (284-364)||(44481309-44481389)
chr7 (292-412)||(16732107-16732227)
chr7 (292-412)||(17710241-17710361)
chr7 (292-364)||(24139233-24139305)
chr7 (292-412)||(9328495-9328615)
chr7 (292-364)||(24251661-24251733)
chr7 (293-412)||(29200849-29200968)
chr7 (327-421)||(30824422-30824516)
chr7 (303-412)||(22289415-22289524)
[»] chr8 (8 HSPs)
chr8 (265-397)||(8670180-8670312)
chr8 (292-364)||(13415245-13415317)
chr8 (292-421)||(7127388-7127517)
chr8 (292-412)||(477949-478069)
chr8 (284-364)||(11870486-11870566)
chr8 (292-364)||(40588623-40588695)
chr8 (292-356)||(9497008-9497072)
chr8 (292-364)||(33642657-33642729)
[»] chr1 (13 HSPs)
chr1 (293-412)||(5609513-5609632)
chr1 (265-364)||(13075896-13075994)
chr1 (269-364)||(17975252-17975347)
chr1 (292-364)||(4395380-4395452)
chr1 (268-324)||(323772-323828)
chr1 (292-412)||(16816690-16816810)
chr1 (292-364)||(25682873-25682945)
chr1 (284-412)||(44602926-44603049)
chr1 (292-412)||(48949617-48949737)
chr1 (281-356)||(17371678-17371753)
chr1 (284-411)||(24538662-24538789)
chr1 (328-427)||(51113474-51113573)
chr1 (327-380)||(23163357-23163410)
[»] chr4 (17 HSPs)
chr4 (230-487)||(40727062-40727319)
chr4 (230-426)||(21163276-21163471)
chr4 (265-427)||(33582849-33583008)
chr4 (292-424)||(51259422-51259554)
chr4 (292-412)||(56065807-56065927)
chr4 (265-355)||(39251572-39251662)
chr4 (294-412)||(49951487-49951605)
chr4 (302-412)||(51734875-51734985)
chr4 (292-412)||(37245745-37245865)
chr4 (293-364)||(32576942-32577013)
chr4 (292-364)||(2065075-2065147)
chr4 (284-412)||(41835196-41835324)
chr4 (292-351)||(21321765-21321824)
chr4 (314-421)||(29655581-29655688)
chr4 (327-364)||(28426405-28426442)
chr4 (328-421)||(44936011-44936104)
chr4 (327-364)||(49119328-49119365)
[»] chr5 (12 HSPs)
chr5 (230-349)||(32378181-32378300)
chr5 (265-352)||(12717743-12717830)
chr5 (265-352)||(12778967-12779054)
chr5 (292-356)||(4268329-4268393)
chr5 (292-364)||(22767166-22767238)
chr5 (293-364)||(25731030-25731101)
chr5 (302-364)||(20205177-20205239)
chr5 (292-364)||(23075054-23075126)
chr5 (328-424)||(26597386-26597482)
chr5 (327-412)||(31908324-31908409)
chr5 (328-364)||(8388308-8388344)
chr5 (292-364)||(11375415-11375487)
[»] chr2 (6 HSPs)
chr2 (265-427)||(25538056-25538218)
chr2 (292-392)||(88753-88853)
chr2 (292-364)||(34695797-34695869)
chr2 (292-364)||(34718209-34718281)
chr2 (327-412)||(9710129-9710214)
chr2 (292-350)||(14827315-14827373)
[»] scaffold0446 (1 HSPs)
scaffold0446 (292-412)||(364-484)


Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 29 - 544
Target Start/End: Complemental strand, 5542924 - 5542409
Alignment:
Q  29 acattgatttactctatcacctattaatattaatatttagtaacattttactatttaatggaacacatttttgtgatggagctgcatgttcacaccagtt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542924 acattgatttactctatcacctattaatattaatatttagtaacattttactatttaatggaacacatttttgtgatggagctgcatgttcacaccagtt 5542825  T
Q  129 gctcacaatgtgttatgcatctattcttactttgaaaacagaattaggaaagtggtagggtttgaattttagctcacacnnnnnnnnnnnnnaccgaaac 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  5542824 gctcacaatgtgttatgcatctattcttactttgaaaacagaattaggaaagtggtagggtttgaattttagctcacactttttttttttttaccgaaac 5542725  T
Q  229 caacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542724 caacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgt 5542625  T
Q  329 atgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542624 atgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactca 5542525  T
Q  429 gaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctccacccttgatgcatatccaaccaaccg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542524 gaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctccacccttgatgcatatccaaccaaccg 5542425  T
Q  529 aattgcttccatgaac 544  Q
    ||||||||||||||||    
T  5542424 aattgcttccatgaac 5542409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 412
Target Start/End: Original strand, 15605885 - 15606007
Alignment:
Q  290 atggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagct 389  Q
    ||||||||||| ||||||||| ||||||||||| |  | |||||||||||||||||||||||  ||| |||| || |  || |||| ||||||| ||| |    
T  15605885 atggtgactagcccaagaataagccgccctagctaaagcatgagcaaccatgttcgcttgtctgctaacaaaattcacctcgaagttggaatgtaaagat 15605984  T
Q  390 aacatagaaataatattagaaac 412  Q
    |||  | |||||||| |||||||    
T  15605985 aactgataaataatactagaaac 15606007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 22534616 - 22534535
Alignment:
Q  268 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttg 349  Q
    |||||||||||||||||||||||||| || |   ||||||| ||||||||||| |||  |||||| || |||||||||||||    
T  22534616 aaggaggacaaatctcaaaaacatggcgattgagccaagaaaatgccgccctaacaatcgtatgaacatccatgttcgcttg 22534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 11731554 - 11731634
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||| ||||||||||| ||||||  | || |||||||| |  ||||||||||||||||||||||| | |||| |||||||    
T  11731554 aaaaatatggtgactagcccaagagcaggctgccctagctaaagtatgagcaaccatgttcgcttgcctcctaacaaactt 11731634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 34104358 - 34104430
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| |||||||| |||| |   |||||||||||||||| ||||||| |||| |||||||    
T  34104358 ggtgactagcccaagaacatgccgccatagctaagctatgagcaaccatgtttgcttgtctcctaacaaactt 34104430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 14680421 - 14680336
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 412  Q
    |||||||||||||||||||| |||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  14680421 gtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 14680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 265 - 414
Target Start/End: Original strand, 49525060 - 49525209
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |  ||||||||||||| || |||||| |||||||||||||||||||| |||||||    
T  49525060 tacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaagggtgtgagcagccatgttcgcttgtcgcctaacaaactt 49525159  T
Q  365 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaacta 414  Q
    ||  ||||| | ||||||| || |||| |||||  |||||  ||||||||    
T  49525160 tacctcaaaattggaatgtaaaactaaaatagacttaataaaagaaacta 49525209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 232 - 364
Target Start/End: Complemental strand, 18720993 - 18720861
Alignment:
Q  232 cttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatg 331  Q
    ||||| ||||||||||  |||||| ||  | | ||||||||||||||||||||||||||||| || ||| ||||||| |||||||| ||||||  |||||    
T  18720993 cttaattgatatcattaattaaaacagtgtcaatacaaggaggacaaatctcaaaaacatggcgattaggccaagaacatgccgccatagcaatcgtatg 18720894  T
Q  332 agcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||||| | ||||  ||||| |||||||    
T  18720893 agcaaccatgtgcacttgatgcctaacaaactt 18720861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 26046982 - 26046912
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaac 362  Q
    ||||||||| ||||||||| ||||||||||| |  ||||||||||||||||||||||||| |||| |||||    
T  26046982 ggtgactagcccaagaataagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaac 26046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 27608796 - 27608916
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| | ||||| ||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  27608796 ggtgactagcccaagaacaggccgctctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttggaatgtaaagataa 27608895  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  27608896 ctgaaaaataatactagaaac 27608916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 34497265 - 34497337
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| | ||||||||||| |   |||||||||||||||||||||||| |||| |||||||    
T  34497265 ggtgactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaactt 34497337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 42340170 - 42340290
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| | ||||| | ||||||||| | |  || |||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||     
T  42340170 ggtgactagccaaagaacaggccgccctatctaaagtgtgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatag 42340269  T
Q  392 catagaaataatattagaaac 412  Q
    |  | ||||||||||||||||    
T  42340270 ctgataaataatattagaaac 42340290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 1834414 - 1834457
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaa 308  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||    
T  1834414 tacaaggaggataaatctcaataacatgttgactagaccaagaa 1834457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 2121340 - 2121301
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaacttta 366  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  2121340 gtatgagcaaccatgttcgcttgtctcctaacaaacttta 2121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 2615777 - 2615705
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| | | ||||||||  |  ||||||||||||||||||| ||||| |||| |||||||    
T  2615777 ggtgactagcccaagaacaggtcgccctagttaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 2615705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 53497326 - 53497262
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 356  Q
    ||||||||| ||||||| | || |||||||| |  ||||||||| ||||||||||||||| ||||    
T  53497326 ggtgactagcccaagaacaggctgccctagctaaagtatgagcagccatgttcgcttgtctccta 53497262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 55199769 - 55199733
Alignment:
Q  328 tatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||||||||||||||||| |||| |||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaactt 55199733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 414
Target Start/End: Complemental strand, 13440 - 13293
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||| | |||||||||||||| |  |||||| |||||||||||||||| ||| |||||||    
T  13440 tacaaggaggacaaatctcaaagacacggtgactagcccaagaacaggccgccctagcaagag--tgagcagccatgttcgcttgtcgtctaacaaactt 13343  T
Q  365 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaacta 414  Q
    ||  ||||||| || |||| || |||| |||||  |||||  ||||||||    
T  13342 tacctcaaagttgggatgtaaaactaaaatagacttaataagagaaacta 13293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 28598099 - 28598195
Alignment:
Q  268 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||  ||||||||| ||||||| ||||| |||||  |||||||    
T  28598099 aaggaggacaaatctcaaaaacatggcgactaggctaagaatatgccgccctagcaatcgtatgagcagccatgtttgcttgacgcctgacaaactt 28598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 268 - 397
Target Start/End: Original strand, 6056246 - 6056375
Alignment:
Q  268 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttat 367  Q
    ||||||||||||| | |||||||||| |||||| ||||||| |||||||||||||||  |||||| |||||||||||||||| |||| | ||||||| |     
T  6056246 aaggaggacaaatttaaaaaacatggcgactaggccaagaacatgccgccctagcaatcgtatgaacaaccatgttcgcttgacgcccaacaaacttcac 6056345  T
Q  368 gtcaaagtcggaatgtgaagctaacataga 397  Q
     ||||||| ||||  | ||||||| |||||    
T  6056346 ctcaaagttggaaaataaagctaatataga 6056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 44481389 - 44481309
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||| ||||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  44481389 aaaaatatggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 44481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 16732227 - 16732107
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  16732227 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 16732128  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  16732127 ctgataaataatactagaaac 16732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 17710361 - 17710241
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  17710361 ggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 17710262  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  17710261 ctgataaataatactagaaac 17710241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 24139305 - 24139233
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24139305 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24139233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 9328495 - 9328615
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||||| | || | |||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  9328495 ggtgactagcccaagaataggacgtcgtagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaagataa 9328594  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  9328595 ctgataaataatactagaaac 9328615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 24251733 - 24251661
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||  |||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24251733 ggtgactagctcaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24251661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 29200849 - 29200968
Alignment:
Q  293 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 392  Q
    |||||||| ||||||| |  |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||    
T  29200849 gtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataac 29200948  T
Q  393 atagaaataatattagaaac 412  Q
      | |||||||| |||||||    
T  29200949 tgataaataatactagaaac 29200968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 30824422 - 30824516
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 421  Q
    |||||||||||||||||||||| || |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||| | ||||||| || |||||    
T  30824422 gtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaatgtaaagataactgataaataagactagaaacaataacata 30824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 22289524 - 22289415
Alignment:
Q  303 caagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataa 402  Q
    |||||| | ||||||||||| |   |||||||||||||||||||||||| |||| ||||| | |  || |||| ||||||| ||| ||||  | ||||||    
T  22289524 caagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaagataactgaaaaataa 22289425  T
Q  403 tattagaaac 412  Q
    || |||||||    
T  22289424 tactagaaac 22289415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 397
Target Start/End: Original strand, 8670180 - 8670312
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||| ||||||||||||| | | ||||||||| ||||||| | |||||||||| ||| || |||||||||||||| | |||||||||| |||||||    
T  8670180 tacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaaactt 8670279  T
Q  365 tatgtcaaagtcggaatgtgaagctaacataga 397  Q
    ||  ||||||| || |||| || |||| |||||    
T  8670280 tacctcaaagttgggatgtaaaactaaaataga 8670312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 13415317 - 13415245
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||||||||| ||||||||||||    
T  13415317 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgcttgtctcctagcaaactt 13415245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 7127517 - 7127388
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| |  |||||||||| |  |||||||||| |||||||||||||| |||| ||||||| |  ||||||| ||||||| ||| |||    
T  7127517 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttggaatgtaaagataa 7127418  T
Q  392 catagaaataatattagaaactatgacata 421  Q
    |  | |||||||| | ||||| || |||||    
T  7127417 ctgataaataatacttgaaacaataacata 7127388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 477949 - 478069
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||| ||| ||||||| | | ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  |  |||| ||||||| ||| |||    
T  477949 ggtgattagcccaagaacaggacgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaagataa 478048  T
Q  392 catagaaataatattagaaac 412  Q
    |  | ||||||||||||||||    
T  478049 ctgataaataatattagaaac 478069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 11870566 - 11870486
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||| ||||||| ||| ||||||| | |  |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  11870566 aaaaatatggtgattagcccaagaacaggttgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 11870486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 40588623 - 40588695
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| | ||||||||||| |  ||||| |||| |||||||||||||| |||| |||||||    
T  40588623 ggtgactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttcgcttgtctcctaacaaactt 40588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 9497072 - 9497008
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 356  Q
    ||||||||| ||||||| | ||||||||||| |  |||| |||||| ||||||||||||| ||||    
T  9497072 ggtgactagtccaagaacaggccgccctagctaaagtataagcaactatgttcgcttgtctccta 9497008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 33642657 - 33642729
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| |  || ||||||| |  |||||| |||||||||||||||||| |||| |||||||    
T  33642657 ggtgactagcccaagaacagaccaccctagctaaagtatgaacaaccatgttcgcttgtctcctaacaaactt 33642729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 5609632 - 5609513
Alignment:
Q  293 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 392  Q
    |||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||    
T  5609632 gtgactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataac 5609533  T
Q  393 atagaaataatattagaaac 412  Q
      | |||||||| |||||||    
T  5609532 tgataaataatactagaaac 5609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 265 - 364
Target Start/End: Original strand, 13075896 - 13075994
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||||||||||||||||||||||| |||||| | | ||| |||||||||||| ||  ||||||||| |||||||||||||  ||||| |||||||    
T  13075896 tacaaggaggacaaatctcaaaaacatggggactaggctatgaacatgccgccctag-aatggtatgagcagccatgttcgcttgatgcctaacaaactt 13075994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 17975347 - 17975252
Alignment:
Q  269 aggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||||||||||||||||||| |||||| |||| || ||| | ||||||||| ||||||||||  |||||||| ||| |||||  |||||||    
T  17975347 aggaggacaaatctcaaaaacatggcgactaggccaaaaacatgtctccctagcaattgtatgagcagtcatgttcgtttgacgcctgacaaactt 17975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 4395452 - 4395380
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  4395452 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 4395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 323772 - 323828
Alignment:
Q  268 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaa 324  Q
    |||||| ||||||||||||||||| | |||||| |||||||||||| ||| ||||||    
T  323772 aaggagaacaaatctcaaaaacatagcgactaggccaagaatatgcggccttagcaa 323828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 16816690 - 16816810
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||||| | ||||||| | |  |||||||||||||||||| ||| || |||| ||||||| |  | ||||| ||||||| ||| |||    
T  16816690 ggtgactagcccaagaataagtcgccctaactaaagtatgagcaaccatgttctcttctctcctaacaaacttcaccttaaagttggaatgtaaagataa 16816789  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  16816790 ctgataaataatactagaaac 16816810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 25682945 - 25682873
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||  ||||||| ||||| ||||||| |  ||||||||||||||| ||||||||| |||| |||||||    
T  25682945 ggtgactaacccaagaacatgcctccctagctaaagtatgagcaaccatgctcgcttgtctcctaacaaactt 25682873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 44603049 - 44602926
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 383  Q
    ||||| ||||||||||| ||||||| | |||||||||      |||||||| |||||||||||||||| |||| ||||||| |  || |||| |||||||    
T  44603049 aaaaatatggtgactagcccaagaacaggccgccctaa-----gtatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttggaatgt 44602955  T
Q  384 gaagctaacatagaaataatattagaaac 412  Q
     ||| ||||  | |||||||| |||||||    
T  44602954 aaagataactgataaataatactagaaac 44602926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 48949617 - 48949737
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| | || |||||||| |   |||||| ||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  48949617 ggtgactagcccaagaacaggctgccctagctaagctatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 48949716  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  48949717 ctgaaaaataatactagaaac 48949737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 17371753 - 17371678
Alignment:
Q  281 ctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 356  Q
    |||||||| | |||||||||  |||||| ||||||||||||| |  |||||||| ||||| |||||||||| ||||    
T  17371753 ctcaaaaatacggtgactagctcaagaacatgccgccctagctaaggtatgagcgaccatattcgcttgtctccta 17371678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 411
Target Start/End: Complemental strand, 24538789 - 24538662
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 383  Q
    ||||| ||||||||||| | ||||| |||  | ||||||||  |||||||||| |||||||||||||  |||| | ||||| |  |||||||  ||||||    
T  24538789 aaaaatatggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgt 24538690  T
Q  384 gaagctaacatagaaataatattagaaa 411  Q
     ||| ||||| | |||||||| ||||||    
T  24538689 aaagataacagataaataatactagaaa 24538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 51113573 - 51113474
Alignment:
Q  328 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 427  Q
    ||||||||||||||||||||| || |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| ||  ||||||||||    
T  51113573 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgttaagataactgaaaaataatactagaaacaatagcataaaactc 51113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 23163410 - 23163357
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaa 380  Q
    |||||||||||||||||||||||||  ||| |||||||||| || |||| ||||    
T  23163410 gtatgagcaaccatgttcgcttgtcttctaacaaactttatctcgaagttggaa 23163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 487
Target Start/End: Complemental strand, 40727319 - 40727062
Alignment:
Q  230 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 329  Q
    ||||||| | ||||||||  |||||| ||  ||| || ||||||||||||||||||| |||||| |||||| |||| || ||| | |||||||||  |||    
T  40727319 aacttaatttatatcattaattaaaatagcattaatataaggaggacaaatctcaaatacatggcgactaggccaaaaacatgtctccctagcaatcgta 40727220  T
Q  330 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactcag 429  Q
    |||||||| ||| ||||||| |||||| ||||||| |  ||||||| ||||  | ||||| ||| |||  ||||  |||| ||||| |||| |||||| |    
T  40727219 tgagcaactatgctcgcttgacgcctaacaaacttcacctcaaagttggaaaataaagcttacacagacttaatgatagatactataacattaaactctg 40727120  T
Q  430 aagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaa 487  Q
    |||| |||   || ||||  ||||| |  ||||| |||||| | ||||||||||||||    
T  40727119 aagcaccactactctgggctgaaatccgatccacaagagtacgagaatccgtctcaaa 40727062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 230 - 426
Target Start/End: Original strand, 21163276 - 21163471
Alignment:
Q  230 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 329  Q
    ||||||||||||||||||  |||||| || |  | |||||||||||| ||||| |||||||||||||||||  |||||| ||| |||| ||||||  |||    
T  21163276 aacttaactgatatcattaattaaaaaagatcaa-tacaaggaggacgaatctaaaaaacatggtgactaggtcaagaacatgtcgccttagcaatcgta 21163374  T
Q  330 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaact 426  Q
    ||||||  |||||||||||| |||||  ||||||| |  ||||||| ||||  | |||||| ||||||  |||||  ||| ||||| |||| |||||    
T  21163375 tgagcagtcatgttcgcttgacgcctgacaaacttcacctcaaagttggaaaataaagctagcatagacttaataaaagagactataacattaaact 21163471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 427
Target Start/End: Complemental strand, 33583008 - 33582849
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||| ||||||||||||||| | | | ||||||| ||||||| | |||||| ||||||| || |||||| |||||||||||||||||||   ||||||    
T  33583008 tacaagcaggacaaatctcaaatatacgatgactagcccaagaacaagccgccttagcaagagtgtgagcagccatgttcgcttgtcgcct---aaactt 33582912  T
Q  365 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 427  Q
    ||  |||||||  | |||| || |||| |||||  |||||  |||||||| ||||| ||||||    
T  33582911 tacctcaaagttaggatgtaaaactaaaatagacttaataagagaaactaagacatgaaactc 33582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 51259422 - 51259554
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| |||| |||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  51259422 ggtgactagcccaaaaataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 51259521  T
Q  392 catagaaataatattagaaactatgacataaaa 424  Q
    |  | |||||||| ||||||| || ||||||||    
T  51259522 ctgaaaaataatactagaaacaataacataaaa 51259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 56065927 - 56065807
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||  ||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| |||    
T  56065927 ggtgactagcccaaatataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataa 56065828  T
Q  392 catagaaataatattagaaac 412  Q
    |  | ||||||||||||||||    
T  56065827 ctgaaaaataatattagaaac 56065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 39251572 - 39251662
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcct 355  Q
    ||||||||||||||||||||||||||||| | |||| ||||||| ||||  |||||||||  ||||||||| ||| |||| |||| |||||    
T  39251572 tacaaggaggacaaatctcaaaaacatggcgtctaggccaagaacatgctaccctagcaatcgtatgagcagccacgttcacttgacgcct 39251662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 49951605 - 49951487
Alignment:
Q  294 tgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaaca 393  Q
    ||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||     
T  49951605 tgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataact 49951506  T
Q  394 tagaaataatattagaaac 412  Q
     | |||||||| |||||||    
T  49951505 gataaataatactagaaac 49951487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 302 - 412
Target Start/End: Original strand, 51734875 - 51734985
Alignment:
Q  302 ccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaata 401  Q
    ||||||| | ||||||||||| |  |||||||||||||||||| |||||| |||| ||||||| |  || |||| ||||||| ||| ||||| | |||||    
T  51734875 ccaagaacaggccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagataacagataaata 51734974  T
Q  402 atattagaaac 412  Q
    ||| |||||||    
T  51734975 atactagaaac 51734985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 37245745 - 37245865
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| |  |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| |||    
T  37245745 ggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataa 37245844  T
Q  392 catagaaataatattagaaac 412  Q
    |  | |||||||| |||||||    
T  37245845 ctgataaataatactagaaac 37245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 32576942 - 32577013
Alignment:
Q  293 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||| ||||||| | || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  32576942 gtgactagcccaagaacaggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 32577013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 2065147 - 2065075
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| ||||  ||||||| |  ||||||||||||||||||| ||||| |||| |||||||    
T  2065147 ggtgactagcccaagaacatgctaccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 2065075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 41835196 - 41835324
Alignment:
Q  284 aaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgt 383  Q
    ||||| || |||||||| ||||||| | ||||||||| | |   |||||| ||||||||||||||||| |||| ||||||| || || || | |||||||    
T  41835196 aaaaatatagtgactagcccaagaacaggccgccctatctaaactatgaggaaccatgttcgcttgtctcctaacaaacttcatctcgaaattggaatgt 41835295  T
Q  384 gaagctaacatagaaataatattagaaac 412  Q
     ||| ||||  | |||||||| |||||||    
T  41835296 aaagataactgataaataatactagaaac 41835324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 21321824 - 21321765
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtc 351  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||| |||||||||    
T  21321824 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgatcgcttgtc 21321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 29655581 - 29655688
Alignment:
Q  314 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaact 413  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| || || |||| | ||||| ||| || |  | |||||||| |||||||     
T  29655581 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagtggaaatgtaaagatagctgataaataatactagaaaca 29655680  T
Q  414 atgacata 421  Q
    || |||||    
T  29655681 ataacata 29655688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 28426442 - 28426405
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28426442 gtatgagcaaccatgttcgcttgtctcctaacaaactt 28426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 44936011 - 44936104
Alignment:
Q  328 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 421  Q
    ||||||||||||||||||||||||  ||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| || |||||    
T  44936011 tatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgtaaagataactgataaataataatagaaacaataacata 44936104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 49119328 - 49119365
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  49119328 gtatgagcaaccatgttcgcttgtctcctaacaaactt 49119365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 349
Target Start/End: Complemental strand, 32378300 - 32378181
Alignment:
Q  230 aacttaactgatatcattggttaaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgta 329  Q
    |||||||||||||||| |  |||||| ||  | | |||| |||||| ||||||||||||||||| |||||| ||||||| |||||| | ||||||  |||    
T  32378300 aacttaactgatatcagtaattaaaatagtgtcaatacagggaggaaaaatctcaaaaacatggcgactaggccaagaacatgccgtcatagcaatcgta 32378201  T
Q  330 tgagcaaccatgttcgcttg 349  Q
    |||||| |||||||||||||    
T  32378200 tgagcagccatgttcgcttg 32378181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 12717830 - 12717743
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcg 352  Q
    |||||| |||| |||||||| |||||||||||||||| ||||||   |||||||| || |  |||||||||||||| |||||||||||    
T  12717830 tacaagtaggagaaatctcacaaacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcg 12717743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 12779054 - 12778967
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcg 352  Q
    |||||| |||| |||||||| |||||||||||||||| ||||||   |||||||| || |  |||||||||||||| |||||||||||    
T  12779054 tacaagtaggagaaatctcacaaacatggtgactagatcaagaacgggccgccctcgctaaggtatgagcaaccatattcgcttgtcg 12778967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 4268393 - 4268329
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgccta 356  Q
    ||||||||| ||||||| ||||||||||||  |  ||||||||||||||||||||||||| ||||    
T  4268393 ggtgactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctccta 4268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 22767166 - 22767238
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| |||||||| |||| |  ||||||||||||||||||| ||||| |||| |||||||    
T  22767166 ggtgactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaactt 22767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 25731101 - 25731030
Alignment:
Q  293 gtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||| ||||||| | ||||||||||| |  |||||||||||||||||||||| || |||| |||||||    
T  25731101 gtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaactt 25731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 20205239 - 20205177
Alignment:
Q  302 ccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  20205239 ccaagaataggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 20205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 23075126 - 23075054
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||||| ||||||| ||| || |||||| |   |||||||||||||||||||||||| |||| |||||||    
T  23075126 ggtgactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaactt 23075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 26597386 - 26597482
Alignment:
Q  328 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaa 424  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||   | |||||||| ||||||| || ||||||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaa 26597482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 31908324 - 31908409
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 412  Q
    ||||||||||||||||| | || ||| ||| ||||||| || ||||||| | ||||||||| ||||  | ||||||||||| ||||    
T  31908324 gtatgagcaaccatgtttgtttatcgactaacaaacttcatctcaaagttgaaatgtgaagataactgataaataatattataaac 31908409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 8388344 - 8388308
Alignment:
Q  328 tatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8388344 tatgagcaaccatgttcgcttgtctcctaacaaactt 8388308  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 11375415 - 11375487
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||| ||| ||||||| | ||||||||||| |  ||||||||||| ||||||||||||| | || |||||||    
T  11375415 ggtgaatagcccaagaacaggccgccctagctaaagtatgagcaactatgttcgcttgtctcttaacaaactt 11375487  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 427
Target Start/End: Complemental strand, 25538218 - 25538056
Alignment:
Q  265 tacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    ||||||| || |||||||||||||||||| |||||| ||||||| |||||||| ||| |  |||||||||| ||||||||||| | |||||| |||| ||    
T  25538218 tacaaggggggcaaatctcaaaaacatggcgactaggccaagaacatgccgccttagaatttgtatgagcatccatgttcgctagacgcctaacaaattt 25538119  T
Q  365 tatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 427  Q
     |  ||| ||| ||||  | |||||| ||||||| |||||  ||| ||||| |||| ||||||    
T  25538118 cacctcagagttggaaaataaagctagcatagaattaatagaagagactataacattaaactc 25538056  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 88853 - 88753
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||||| | ||||||||||| |  ||||||||||||||||||||||||| || |  |||||| | ||  |||| ||||||| |||||||    
T  88853 ggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgtaaagctaa 88754  T
Q  392 c 392  Q
    |    
T  88753 c 88753  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 34695797 - 34695869
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||| || ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34695797 ggtgacaagcccaagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34695869  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 34718209 - 34718281
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 364  Q
    |||||| || ||||||| | ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34718209 ggtgacaagcccaagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34718281  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 9710214 - 9710129
Alignment:
Q  327 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 412  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9710214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 9710129  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 14827373 - 14827315
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgt 350  Q
    ||||||||| ||||||||||| ||||||||  |  ||||||||||||||||||| ||||    
T  14827373 ggtgactagcccaagaatatgtcgccctagataaagtatgagcaaccatgttcgtttgt 14827315  T

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Target: scaffold0446 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 412
Target Start/End: Complemental strand, 484 - 364
Alignment:
Q  292 ggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaa 391  Q
    ||||||||| ||||  ||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| |||    
T  484 ggtgactagcccaaatataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataa 385  T
Q  392 catagaaataatattagaaac 412  Q
    |  | ||||||||||||||||    
T  384 ctgaaaaataatattagaaac 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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