View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_284 (Length: 220)
Name: NF0928_low_284
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_284 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 43194323 - 43194401
Alignment:
| Q |
125 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac |
203 |
Q |
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| T |
43194323 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac |
43194401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 43194495 - 43194567
Alignment:
| Q |
125 |
aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca |
197 |
Q |
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| T |
43194495 |
aagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca |
43194567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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