View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_307 (Length: 205)
Name: NF0928_low_307
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_307 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 43076667 - 43076787
Alignment:
| Q |
85 |
aatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagc |
184 |
Q |
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| T |
43076667 |
aatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagc |
43076766 |
T |
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| Q |
185 |
tttttccttcttatactttga |
205 |
Q |
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| T |
43076767 |
tttttccttcttatactttga |
43076787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 33966889 - 33966792
Alignment:
| Q |
107 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttg |
204 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttg |
33966792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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