View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_31 (Length: 557)

Name: NF0928_low_31
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_31
NF0928_low_31
[»] chr3 (20 HSPs)
chr3 (257-490)||(44418544-44418777)
chr3 (8-258)||(54747991-54748240)
chr3 (8-258)||(26848103-26848352)
chr3 (8-259)||(25095945-25096180)
chr3 (8-262)||(35612961-35613216)
chr3 (68-256)||(25313366-25313555)
chr3 (72-258)||(50834007-50834194)
chr3 (72-258)||(50841659-50841846)
chr3 (14-261)||(46320431-46320678)
chr3 (14-204)||(48905583-48905772)
chr3 (72-259)||(23026292-23026480)
chr3 (8-204)||(9663849-9664041)
chr3 (14-259)||(22515638-22515885)
chr3 (22-256)||(49794914-49795149)
chr3 (14-242)||(20922722-20922951)
chr3 (258-311)||(18030081-18030134)
chr3 (92-162)||(33280346-33280416)
chr3 (14-59)||(23026233-23026278)
chr3 (115-160)||(31612861-31612906)
chr3 (293-330)||(45054764-45054801)
[»] chr7 (16 HSPs)
chr7 (8-259)||(24989713-24989963)
chr7 (82-259)||(8417658-8417835)
chr7 (8-204)||(7568122-7568317)
chr7 (9-196)||(45062518-45062704)
chr7 (8-263)||(18674498-18674753)
chr7 (8-254)||(23319919-23320165)
chr7 (8-193)||(41850957-41851142)
chr7 (9-259)||(48390264-48390514)
chr7 (8-258)||(48394105-48394354)
chr7 (8-59)||(8417896-8417947)
chr7 (108-164)||(965166-965222)
chr7 (257-344)||(7907545-7907631)
chr7 (26-59)||(8417853-8417886)
chr7 (294-335)||(42121445-42121486)
chr7 (296-340)||(38073711-38073755)
chr7 (266-338)||(45837909-45837981)
[»] chr4 (17 HSPs)
chr4 (8-259)||(43034073-43034323)
chr4 (10-261)||(50150263-50150512)
chr4 (9-259)||(30537575-30537824)
chr4 (9-259)||(27627752-27628001)
chr4 (9-259)||(3067728-3067975)
chr4 (8-260)||(26877161-26877415)
chr4 (8-259)||(782792-783043)
chr4 (8-259)||(36187318-36187569)
chr4 (72-259)||(25934340-25934526)
chr4 (14-202)||(33313287-33313475)
chr4 (14-59)||(25934545-25934590)
chr4 (266-338)||(50297625-50297697)
chr4 (113-168)||(56551518-56551573)
chr4 (258-336)||(30033474-30033552)
chr4 (14-59)||(22651802-22651847)
chr4 (263-335)||(22019487-22019559)
chr4 (257-337)||(28675674-28675754)
[»] chr2 (20 HSPs)
chr2 (23-260)||(11964149-11964384)
chr2 (9-259)||(10448718-10448967)
chr2 (8-259)||(41435552-41435802)
chr2 (8-259)||(21345024-21345271)
chr2 (74-259)||(22066384-22066569)
chr2 (8-259)||(39778593-39778846)
chr2 (14-259)||(10728242-10728487)
chr2 (9-258)||(13693474-13693722)
chr2 (8-253)||(42993749-42993994)
chr2 (14-204)||(7105608-7105797)
chr2 (8-259)||(25186939-25187188)
chr2 (8-251)||(10700167-10700410)
chr2 (8-259)||(19926730-19926979)
chr2 (75-253)||(36191585-36191763)
chr2 (14-259)||(28830957-28831201)
chr2 (120-258)||(41462666-41462805)
chr2 (8-59)||(36191517-36191568)
chr2 (13-47)||(22066346-22066380)
chr2 (298-339)||(410031-410072)
chr2 (266-330)||(25626574-25626638)
[»] chr8 (13 HSPs)
chr8 (8-258)||(13882086-13882334)
chr8 (8-258)||(8669735-8669983)
chr8 (8-249)||(29226286-29226525)
chr8 (9-261)||(37533764-37534016)
chr8 (14-259)||(32305707-32305952)
chr8 (8-253)||(8106899-8107143)
chr8 (14-251)||(35634740-35634977)
chr8 (69-207)||(42569953-42570092)
chr8 (74-209)||(17855397-17855533)
chr8 (86-183)||(36741715-36741815)
chr8 (8-59)||(45177546-45177598)
chr8 (257-338)||(6530398-6530479)
chr8 (298-338)||(8114292-8114332)
[»] chr1 (24 HSPs)
chr1 (8-259)||(1553716-1553966)
chr1 (25-258)||(27332899-27333131)
chr1 (9-259)||(16130456-16130708)
chr1 (9-244)||(35050249-35050483)
chr1 (8-259)||(30222692-30222942)
chr1 (9-261)||(45192517-45192768)
chr1 (72-259)||(16129970-16130158)
chr1 (8-258)||(5800381-5800629)
chr1 (8-260)||(27654604-27654854)
chr1 (8-259)||(40988011-40988262)
chr1 (78-255)||(9411731-9411909)
chr1 (8-176)||(27846418-27846586)
chr1 (14-207)||(36834287-36834474)
chr1 (72-258)||(34546650-34546834)
chr1 (8-259)||(4813694-4813946)
chr1 (136-259)||(35121170-35121293)
chr1 (80-258)||(13879068-13879235)
chr1 (9-144)||(35428415-35428553)
chr1 (8-258)||(23933261-23933512)
chr1 (72-165)||(11907972-11908063)
chr1 (13-105)||(35121301-35121392)
chr1 (9-59)||(16129902-16129952)
chr1 (188-251)||(35428357-35428420)
chr1 (258-335)||(41884610-41884687)
[»] chr6 (3 HSPs)
chr6 (14-259)||(1365644-1365890)
chr6 (72-259)||(24338018-24338206)
chr6 (14-251)||(7243365-7243602)
[»] chr5 (9 HSPs)
chr5 (68-258)||(21262900-21263090)
chr5 (16-258)||(40385185-40385430)
chr5 (8-260)||(33314327-33314578)
chr5 (9-256)||(41174604-41174851)
chr5 (9-268)||(3097491-3097754)
chr5 (10-259)||(24868466-24868715)
chr5 (72-193)||(4237918-4238039)
chr5 (8-59)||(21262545-21262596)
chr5 (130-210)||(2934953-2935034)
[»] scaffold0067 (1 HSPs)
scaffold0067 (14-261)||(6700-6949)
[»] scaffold0008 (2 HSPs)
scaffold0008 (106-261)||(258356-258512)
scaffold0008 (8-59)||(258268-258319)
[»] scaffold0057 (1 HSPs)
scaffold0057 (14-192)||(30477-30654)
[»] scaffold0263 (1 HSPs)
scaffold0263 (227-266)||(19315-19354)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 257 - 490
Target Start/End: Original strand, 44418544 - 44418777
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattacccttatgttttatagttgtattt 356  Q
    ||||||||||||| |||||||||||| |||||||  |||| |||||||| | |||| ||| | ||||||||||| |||||||| ||||||||||||||||    
T  44418544 tatattatatttttcaatgcaaagttgtcctttttgagttacttaacatataccctgaggacagaagttaacatcacccttatattttatagttgtattt 44418643  T
Q  357 gaccatttgtaacctttttccttagcagcgttacctaacaaatggagcagttctagcattggaagtcagcctctgacttgtgacttgtaataagcaaaaa 456  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44418644 gactatttgtaacctttttccttagcagcgttacctaacaaatggagcagttctagcattggaagtcagcctctgacttgtgacttgtaataagcaaaaa 44418743  T
Q  457 tttaataattcttgaaaaactcaggttaaaaatg 490  Q
    ||||||||||||||||||||||||||||||||||    
T  44418744 tttaataattcttgaaaaactcaggttaaaaatg 44418777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 54748240 - 54747991
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||||||||||| ||||||||||| || ||||||||||||||||||||||||        || ||||||||||||||||||| ||||||||||||||||     
T  54748240 ccaagaaaatacgttgaaaatagttatcttcatttaatacacttctacatttaaaaaaa-ttatatgaatacccttaaattaattactctttattccatc 54748142  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54748141 aatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 54748042  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||    
T  54748041 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 54747991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 26848103 - 26848352
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||        ||||||||| |||||||||||| ||||||||||||||||     
T  26848103 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacagttaaaaaaa-ttctatgaacacccttaaattaattactctttattccatc 26848201  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26848202 aacttacttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaat 26848301  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||       ||||||||||||||| ||||||||||||||||||||||||    
T  26848302 gaccaaaaaaattctcacttttgtttataataaaaaggaccggagggagta 26848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 25095945 - 25096180
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||                ||||||||||||||||||| ||||||||||||||||     
T  25095945 ccaagaaaatacattgaaaatagtcatcttcatttaatacatttcta----------------tatgaatacccttaaattaattactctttattccatc 25096028  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25096029 aatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatcttcttataaaaag 25096128  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||    
T  25096129 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 25096180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 35612961 - 35613216
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  35612961 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattccatgaatacccctaaattaattactctttattccacc 35613060  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  35613061 aacttatttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 35613160  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatatt 262  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  35613161 ggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtatatt 35613216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 25313555 - 25313366
Alignment:
Q  68 ttctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagct 167  Q
    |||||||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25313555 ttctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 25313456  T
Q  168 tcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggag 256  Q
    |||||||||||||||||||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  25313455 tcaaacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggagggag 25313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 50834194 - 50834007
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  50834194 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50834095  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||||||||||| |||||  |||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||    
T  50834094 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 50841659 - 50841846
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  50841659 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50841758  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||||||||||| |||||  |||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||    
T  50841759 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 46320678 - 46320431
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||        ||| || || |||| ||||||| |||||||||||| ||  ||||||    
T  46320678 aaatacattgaaaatagtaatattcatttaatacacctctatatttaagaaac-ttccattaacacccctaaattaattactctttatttcaccaactta 46320580  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |||||  |||||||||||||||||     
T  46320579 cttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggacct 46320480  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
          |||||||||||||||||||||||||||||||||||||||||||    
T  46320479 aaaaaattctcacttttgtttctaataaaaaggaccggagggagtatat 46320431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 48905583 - 48905772
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||    
T  48905583 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccaccaactta 48905681  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  48905682 cttacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 23026292 - 23026480
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||| ||| ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23026292 atgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaa 23026391  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||| || ||||||  |||||||||||| ||||       ||||||||||||||||||||||||||||||||||| |||||    
T  23026392 acatacttgaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagtat 23026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 9663849 - 9664041
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  9663849 ccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccacc 9663947  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  9663948 aacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-cttgaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 22515885 - 22515638
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttc--tacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaact 111  Q
    |||||||||||||||||| || |||||||||||||| ||  |||||||        ||| || ||||  ||||||||| |||||||||||||||  ||||    
T  22515885 aaatacattgaaaatagttatcttcatttaatacacctcaatacatttaaaaaaa-ttccataaatattcttaaattaattactctttattccaccaact 22515787  T
Q  112 tacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggac 210  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||||||||||    
T  22515786 tacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaggac 22515687  T
Q  211 cnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |        | ||| ||||||||||||||||||||| ||||||||||||    
T  22515686 caaaaagaatttcagttttgtttctaataaaaaggatcggagggagtat 22515638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 49794914 - 49795149
Alignment:
Q  22 tgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttacttt 121  Q
    |||||||||| || |||||||||||||| |||||||||        ||| |||||||||| | ||||| |||||||||||||||  ||||||||||||||    
T  49794914 tgaaaatagttatcttcatttaatacacctctacatttaattttttttc-atgaataccccttaattaattactctttattccaccaacttacttacttt 49795012  T
Q  122 taatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag--gaccnnnnnnn 218  Q
    ||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||   |             
T  49795013 taatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatacttgaaacttgatcaatatttcttataaaaagaaaaaaaaaaaga 49795111  T
Q  219 ttctcacttttgtttctaataaaaaggaccggagggag 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49795112 ttctcacttttgtttctaataaaaaggaccggagggag 49795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 20922722 - 20922951
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||| | || |||||||||||||| |||||||||         || ||||||| || ||||||| ||| | |||||||||  ||||||    
T  20922722 aaatacattgaaaatatttatcttcatttaatacacctctacatttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaactta 20922821  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||| |||||  ||||||||||||| |||     
T  20922822 cttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaagaacca 20922921  T
Q  213 nnnnnnttctcacttttgtttctaataaaa 242  Q
           | |||||||||||||||||||||    
T  20922922 aaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 18030081 - 18030134
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgccc 311  Q
    ||||||||||||||||||||||||||  ||||| | ||| ||||||||||||||    
T  18030081 atattatattttccaatgcaaagttactctttttaggttccttaacatgtgccc 18030134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 33280346 - 33280416
Alignment:
Q  92 tactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatt 162  Q
    ||||||| ||||||  |||  |||||||||||||||| |||||| |||| ||||||  |||||||||||||    
T  33280346 tactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23026233 - 23026278
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    |||||||||||||||||| || |||||||||||||  |||||||||    
T  23026233 aaatacattgaaaatagttatcttcatttaatacatctctacattt 23026278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 31612861 - 31612906
Alignment:
Q  115 ttacttttaatattatctctcataatcaataagggcacaaatgaaa 160  Q
    |||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  31612861 ttacttttaatattctctctcataatgaataaggacacagatgaaa 31612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 45054764 - 45054801
Alignment:
Q  293 agttgcttaacatgtgcccttagggctgaagttaacat 330  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  45054764 agttgcttaacatgtgcccttagggcacaagttaacat 45054801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 24989963 - 24989713
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||     
T  24989963 ccaagaaaatacatttaaaatagtcatcttcatttaatacacttctacatttaaaaaaa-ttctatgaatacccttaaattaattactctttattccatc 24989865  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24989864 aacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttctaataaaaag 24989765  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||    
T  24989764 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 24989713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 82 - 259
Target Start/End: Complemental strand, 8417835 - 8417658
Alignment:
Q  82 ttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttga 181  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  182 aacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  8417735 aacttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagtat 8417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 7568122 - 7568317
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  7568122 ccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccacc 7568220  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7568221 aacttacttacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 45062704 - 45062518
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||        |||||||||||||||||||||| ||||| |||||||||| |    
T  45062704 caagaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaa-ttctatgaatacccttaaattaattactttttattccatca 45062606  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatctt 196  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  45062605 acttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaaacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 18674753 - 18674498
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||| |||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  18674753 ccaaggaaatacattgaatatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccacc 18674655  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||||||| ||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  18674654 aacttacttattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaattttcttataaaaag 18674555  T
Q  208 gac-cnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatatta 263  Q
    |||          ||||||||||||||||||||||||||| | ||| ||||| ||||    
T  18674554 gacaaaaaaaaaatctcacttttgtttctaataaaaaggatcagagagagtagatta 18674498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 23319919 - 23320165
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| || ||||||||||||||| || ||| |||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  23319919 ccaaggaattacattgaaaatagttatcttcgtttaatacacctctacatttaaaaaat-ttccatgaatacccctaaattaattactctttattccacc 23320017  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  23320018 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 23320117  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggaggg 254  Q
     ||||        ||| | |||||||| |||||||||| |||||||||    
T  23320118 tgaccaacaaaaatctaatttttgtttttaataaaaagtaccggaggg 23320165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 41850957 - 41851142
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||| || || |||||||||||||| |||||||||        || ||||||||||| ||||||| |||||||||||||||      
T  41850957 ccaaggaaatacattgaaaattgttatcttcatttaatacacctctacatttaaatttttttttatgaatacccctaaattaattactctttattccacc 41851056  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat 193  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  41851057 aactcacttacttttaatattctctctcataataaataagggtacaaatgaaatttagtttcaaacatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 48390264 - 48390514
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| |||||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| | |||||| ||| |    
T  48390264 caaggaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattttttatttcatca 48390362  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 207  Q
    |||||||||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  48390363 acttacttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 48390462  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||            |||||||||||||||||||||||||||||||| |||||    
T  48390463 gataaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagtat 48390514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 48394105 - 48394354
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||| | || |||||||||||||| ||||| |||         |  | |||||||| ||||||| |||||||||||||||      
T  48394105 ccaaggaaatacattgaaaatatttatcttcatttaatacacctctacttttttcttcttcttcaagaatacccctaaattaattactctttattccacc 48394204  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||||||||||||||||||  || ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  ||||||||||||    
T  48394205 aacttacttacttttaatatt--ctttcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaa 48394302  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||           |||||||||||||||||||||||||||||||||||||    
T  48394303 ggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagta 48394354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 8417947 - 8417896
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  8417947 ccaagaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaattta 164  Q
    ||||||||||||||||||||| | ||||||||| ||||||  |||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 7907545 - 7907631
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattacccttatgtttt 344  Q
    |||||| |||||||||||||||| ||| | |||| | ||||||||||||||||| | |||||  |||||||||| |||| ||| ||||    
T  7907545 tatattgtattttccaatgcaaaatta-cttttttaggttgcttaacatgtgccttaagggcacaagttaacatgacccatatttttt 7907631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 8417886 - 8417853
Alignment:
Q  26 aatagtcatattcatttaatacacttctacattt 59  Q
    |||| |||||||||||||||||||||||||||||    
T  8417886 aatattcatattcatttaatacacttctacattt 8417853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 42121445 - 42121486
Alignment:
Q  294 gttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  42121445 gttgcttaacatgtgcccttagggcataagttaacatgaccc 42121486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 38073711 - 38073755
Alignment:
Q  296 tgcttaacatgtgcccttagggctgaagttaacattacccttatg 340  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||||    
T  38073711 tgcttaacatgtgccctaagggcacaagttaacatttcccttatg 38073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 45837909 - 45837981
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||||||   ||||| |  |||||||||||||||||| |||||  |||||| ||| |||||||    
T  45837909 ttttccaatgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccctta 45837981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 43034073 - 43034323
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||     
T  43034073 ccaagaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatc 43034171  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43034172 aacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaag 43034271  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||       ||||||||||||||||||||||||||||||||||| |||||    
T  43034272 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagtat 43034323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 50150263 - 50150512
Alignment:
Q  10 aagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    |||||||||||||||||||| |||| |||||||||||  |||||||||||         |||| |||||||||||||||| ||||| |||||||||| ||    
T  50150263 aagaaaatacattgaaaataatcatcttcatttaatatgcttctacatttaaaaaac--tctaggaatacccttaaattaattactttttattccatcaa 50150360  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50150361 cttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaagga 50150460  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    ||       ||||| |||||||||||||||||||||||||||||||||||||    
T  50150461 ccaaaaaaattctcccttttgtttctaataaaaaggaccggagggagtatat 50150512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 30537575 - 30537824
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  |    
T  30537575 caaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaatttttc-atgaatacccctaaattaattactctttattccacca 30537673  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30537674 acttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaagg 30537773  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||         |||||||||||||||||| |||||||| ||||||||||||    
T  30537774 acaaaaaaaaatctcacttttgtttctaacaaaaaggatcggagggagtat 30537824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 27628001 - 27627752
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| |||||||||||||||||| || ||||||||||| | ||||||||||        ||  |||||||||| ||||||| |||||||||||||||  |    
T  27628001 caaggaaatacattgaaaatagttatcttcatttaatatatttctacatttaaaaaaaattacatgaatacccctaaattaattactctttattccacca 27627902  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag 207  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  27627901 acttacttacttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 27627804  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    || |       ||  |||||||||||||||||||||||||||||||||||||    
T  27627803 gatcaaaaaaatttccacttttgtttctaataaaaaggaccggagggagtat 27627752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 3067975 - 3067728
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||        ||| |||||||||  ||||||| ||  ||||||||| |  |    
T  3067975 caaggaaatacattgaaaatagtcatcttcatttaatacacttctacatttagaaaaa-ttc-atgaatacctctaaattaattcttctttattctacta 3067878  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3067877 acttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaagg 3067778  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||        ||||||||||| ||||||||||||||||||||| |||||||    
T  3067777 acaaaaaaaattctcactttt-tttctaataaaaaggaccggatggagtat 3067728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 26877415 - 26877161
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttct-atgaatacccttaaattacttactctttattccat 106  Q
    ||||| |||||||||||||||||| || |||| ||||||||| |||||||||           | |||||||||| ||||||| |||||||||||||||     
T  26877415 ccaaggaaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaaaaatcatgaatacccctaaattaattactctttattccac 26877316  T
Q  107 aaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaa 205  Q
     ||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||| |||||  |||||||||||    
T  26877315 caacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaaacatacttaaaatttggtcaatatttcttataaaa 26877216  T
Q  206 aggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  26877215 aggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtata 26877161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 783043 - 782792
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||      
T  783043 ccaaggaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccacc 782945  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  782944 aacttacttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 782845  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||         | |||||||||||||||||||||||||||||||| |||||    
T  782844 ggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggaggtagtat 782792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 36187569 - 36187318
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||||||||||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||      
T  36187569 ccaagaaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccacc 36187471  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||  ||||||||||||    
T  36187470 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaa 36187371  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||          |||||||||||||||||||||||||||||||| |||||    
T  36187370 ggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagtat 36187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 25934526 - 25934340
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    ||||||||||| |||||| || ||||||||||||  |||||| ||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||    
T  25934526 atgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaa 25934428  T
Q  172 acatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||    
T  25934427 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagagagtat 25934340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 33313475 - 33313287
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    ||||||||| ||||||||||| |||||||||||||||| || ||||         |  ||||||| || ||||||| ||  |||||||||||  ||||||    
T  33313475 aaatacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattcatgaatatccataaattaattcatctttattccactaactta 33313376  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 202  Q
     ||||||||||| || ||||||||||| ||||||||||||||| |||||||  || ||||||| || ||||||| | ||||||||||||    
T  33313375 tttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaaacttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 25934590 - 25934545
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25934590 aaatacattgaaaatagtcatcttcatttaatacacttctatattt 25934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 50297697 - 50297625
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||| |||  |||||   ||||||||||||||||||| |||||  |||||||||| |||||||    
T  50297697 ttttccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccctta 50297625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 56551518 - 56551573
Alignment:
Q  113 acttacttttaatattatctctcataatcaataagggcacaaatgaaatttagctt 168  Q
    |||| |||||| |||| ||||| ||||| | |||||||||||||||||||||||||    
T  56551518 acttgcttttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 30033552 - 30033474
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccct 336  Q
    ||||||| |||||||||||||||||   |||||  |||| |||||||| |||| |||||||  |||||||||| |||||    
T  30033552 atattatgttttccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagttaacatgaccct 30033474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22651802 - 22651847
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  22651802 aaatacattgaaaataatcatcttcttttaatacacttctatattt 22651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 22019487 - 22019559
Alignment:
Q  263 atattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    ||||||||||||| ||| ||  ||||||   ||| |||||||||||||||||||||  |||||||||| ||||    
T  22019487 atattttccaatgtaaaattgcccttttcgggtttcttaacatgtgcccttagggcacaagttaacatgaccc 22019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 28675754 - 28675674
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctt 337  Q
    |||||||| ||||| |||||||| ||   ||| | | ||||||||||||||||||| |||||  |||||||||| ||||||    
T  28675754 tatattatgttttctaatgcaaaattgctcttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccctt 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 11964384 - 11964149
Alignment:
Q  23 gaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttactttt 122  Q
    |||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11964384 gaaaatagtcatcttcatttaatacacttctacatttaaaaaa--ttctatgaatacccttaaattaattactctttattccatcaacttacttactttt 11964287  T
Q  123 aatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttct 222  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||    
T  11964286 aatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattct 11964187  T
Q  223 cacttttgtttctaataaaaaggaccggagggagtata 260  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11964186 cacttttgtttctaatagaaaggaccggagggagtata 11964149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 10448967 - 10448718
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||        || ||||||||||||||||||| ||||| |||||||||| |    
T  10448967 caagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaag-ttatatgaatacccttaaattaattactatttattccatca 10448869  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  10448868 acttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaagagg 10448769  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||       |||||||||||||||||||||||||||||||||||||||||    
T  10448768 accaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 10448718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 41435552 - 41435802
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| |||     
T  41435552 ccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctacatttaattttttttc-atgaatacccttaaattaattactctttatttcatc 41435650  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41435651 aacttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttattataaaaag 41435750  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||       |||||||||||||||||||||||||||||||||| ||||||    
T  41435751 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagcgagtat 41435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 21345024 - 21345271
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||||        |||||| ||||||||||||||| ||||||||||||||||     
T  21345024 ccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacatttaaaacaa-ttctataaatacccttaaattaattactctttattccatc 21345122  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||  | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21345123 aacttacttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 21345220  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||       ||||||||||||||||||||||||||||||||||| |||||    
T  21345221 gacc-aaaaaattctcacttttgtttctaataaaaaggaccggaggaagtat 21345271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 22066384 - 22066569
Alignment:
Q  74 gaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaac 173  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  174 atacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggatcggagggagtat 22066569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 39778593 - 39778846
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnn-ttctatgaatacccttaaattacttactctttattccat 106  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||||         ||| |||||||||||||||||| |||||||||||||||     
T  39778593 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaattccatgaatacccttaaattaattactctttattccac 39778692  T
Q  107 aaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaa 205  Q
     ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  39778693 caacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaa 39778792  T
Q  206 aggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||||       || |||||||||||||||||||||| |||||||||||||||    
T  39778793 aggaccaaaaaaattttcacttttgtttctaataaaaaagaccggagggagtat 39778846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 10728242 - 10728487
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || |||| ||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||    
T  10728242 aaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaattc-atgaatacccctaaattaattactctttattccaccaactta 10728340  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||     
T  10728341 cttacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatacttgaaactttgtcaatatttcttataaaaaggacca 10728440  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
          |||||||||||||||||||||||||||||||||||||||||    
T  10728441 aaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 10728487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 13693474 - 13693722
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| ||||        ||| |||||||||| ||||||| || ||||||||||||  |    
T  13693474 caaggaaatacattgaaaatagtcatcttcatttaatacacttctatatttaaaaaatattc-atgaatacccctaaattaattcctctttattccacta 13693572  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    ||||| ||||||||||| || ||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  13693573 acttatttacttttaattttctctctcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaatcttcttataaaaagg 13693672  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||       |||||||||||||||||||||||||||||||||| |||||    
T  13693673 accaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 13693722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 42993749 - 42993994
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||        | | |||||||||| ||||||| || ||||||||||||      
T  42993749 ccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatatttaaataaaatcc-atgaatacccctaaattaattcctctttattccact 42993847  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||| ||||||||||| || ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  42993848 aacttatttacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaag 42993947  T
Q  208 gacc-nnnnnnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
    ||||        |||||||||||||||||||||||||||||||||||    
T  42993948 gaccaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 7105797 - 7105608
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||    
T  7105797 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaatttttttc-atgaatacccctaaattaattactctttattccaccaactta 7105699  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  7105698 cttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatacttgaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 25187188 - 25186939
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||||        ||| ||||||| |||||||||| |||||||| ||||||      
T  25187188 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaa-ttccatgaatatccttaaattaattactcttaattccacc 25187090  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||||||    
T  25187089 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaa 25186990  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
     ||||       || ||||||||||||||||||||||||||||| ||||||||    
T  25186989 tgaccaaaaaaatt-tcacttttgtttctaataaaaaggaccgg-gggagtat 25186939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 10700167 - 10700410
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||      
T  10700167 ccaaggaaatacattgaaaatagttattttcatttaatacacctctacatttaaaaaaa-ttccatgaatacccctaaattaattactctttattccacc 10700265  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||||||    
T  10700266 aacttatttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaa 10700365  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
     |||        |||||||||||||||||||||||||||| ||||    
T  10700366 agactaaaaaaattctcacttttgtttctaataaaaaggatcgga 10700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 19926730 - 19926979
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||| | || |||||||||||||| ||||| |||        ||| | |||||||| ||||||| |||||||||||||||      
T  19926730 ccaaggaaatacattgaaaatatttatcttcatttaatacacctctacttttttttcttcttcaa-gaatacccctaaattaattactctttattccacc 19926828  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  ||||||||||||    
T  19926829 aacttacttacttttaatatt--ctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaa 19926926  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||        | ||||||||||||||||||||||||||||||||||||||    
T  19926927 ggaccaaaaaaaatttcacttttgtttctaataaaaaggaccggagggagtat 19926979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 36191585 - 36191763
Alignment:
Q  75 aatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaaca 174  Q
    ||||||| ||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36191585 aatacccctaaattaattactctttattccacaa-cttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaaca 36191683  T
Q  175 tacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
    ||||||||||||  |||||  |||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  36191684 tacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 28831201 - 28830957
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || |||||||||||||| ||||| |||        |   |||||||||| ||||||| |||||||||||| ||  || |||    
T  28831201 aaatacattgaaaatagttatcttcatttaatacacctctacgttttaaaaaaatc--atgaatacccctaaattaattactctttattgcaccaattta 28831104  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||  |||||||||||||||||     
T  28831103 cttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggacca 28831004  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
          |||| |||||| |||||||||||| ||||| |||| |||||    
T  28831003 aaaaaattcttacttttatttctaataaaatggaccagaggaagtat 28830957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 41462805 - 41462666
Alignment:
Q  120 tttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnn 218  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||           
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  219 ttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggagggagta 41462666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 36191517 - 36191568
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    |||||||||||||||||||||||| || || ||||||||||| |||| ||||    
T  36191517 ccaagaaaatacattgaaaatagttatctttatttaatacacctctatattt 36191568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 22066346 - 22066380
Alignment:
Q  13 aaaatacattgaaaatagtcatattcatttaatac 47  Q
    |||||||||||||||||||||| ||||||||||||    
T  22066346 aaaatacattgaaaatagtcatcttcatttaatac 22066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 410031 - 410072
Alignment:
Q  298 cttaacatgtgcccttagggctgaagttaacattacccttat 339  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  410031 cttaacatgtgcccttagggcacaagttaacatgacccttat 410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 25626574 - 25626638
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacat 330  Q
    ||||||||| ||||||| | | ||| | ||| |||||||||||||||||||||  ||||||||||    
T  25626574 ttttccaattcaaagttgttcattttaggttccttaacatgtgcccttagggcacaagttaacat 25626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 13882334 - 13882086
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||     
T  13882334 ccaagaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatc 13882236  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13882235 aacttacttacttt-aatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaag 13882137  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||       ||||||||||| ||||||||||||||||||||||| ||||    
T  13882136 gaccaaaaaaattctcacttttatttctaataaaaaggaccggaggtagta 13882086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 8669983 - 8669735
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||        || ||||||||||||||||||| ||||||||||||||||     
T  8669983 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaatt-tatgaatacccttaaattaattactctttattccatc 8669885  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8669884 aacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaag 8669785  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    || |        |||||||||| ||||||||||||||||||||| ||||||    
T  8669784 ga-caaaaaaaatctcacttttatttctaataaaaaggaccggaaggagta 8669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 29226525 - 29226286
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||        |||||| ||||||||||||||| ||||||||||||||||     
T  29226525 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaa-ttctatcaatacccttaaattaattactctttattccatc 29226427  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29226426 aacttacttacttttaatattttcattcataatcaataagg-cacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 29226328  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccg 249  Q
    || |       |||||||||||||||||||||||||||||||    
T  29226327 gaacaaaaaaattctcacttttgtttctaataaaaaggaccg 29226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 37534016 - 37533764
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||||||||        || |||||||||  |||||||| |||||||||||||||| |    
T  37534016 caagaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaattatatgaatacatttaaattaattactctttattccatca 37533917  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||| |||||||||    
T  37533916 acttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaaacttgatcaatcttctaataaaaagg 37533817  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    | |       ||||||||||||||| |||||||||||| |||||  |||||||    
T  37533816 atcaaaaaaattctcacttttgtttataataaaaaggatcggagaaagtatat 37533764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 32305952 - 32305707
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||  ||||||    
T  32305952 aaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaactta 32305854  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||     
T  32305853 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 32305754  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
          || |||||||||||||||||||||||||||||||| |||||    
T  32305753 aaaaaattttcacttttgtttctaataaaaaggaccggaggtagtat 32305707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 8107143 - 8106899
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||        ||| |||||||||| ||||||| || ||||||||||||      
T  8107143 ccaaggaaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaattc-atgaatacccctaaattaattcctctttattccact 8107045  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||| ||||||||||| || | ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  8107044 aacttatttacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaag 8106945  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
    || |       |||||| ||||||||||||||||||||||||||||    
T  8106944 gatcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 35634740 - 35634977
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || |||||||||||||||| |||||||        | | ||||||| || ||||||| |||||||||||  ||  ||||||    
T  35634740 aaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatcc-atgaataaccctaaattaattactctttatcgcaccaactta 35634838  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||      
T  35634839 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacaa 35634938  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
          ||||||||||||||| ||||||||| |||||||    
T  35634939 aaaaaattctcacttttgtttataataaaaatgaccgga 35634977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 42570092 - 42569953
Alignment:
Q  69 tctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagctt 168  Q
    |||||||||| || ||||||| ||||| |||||| ||| |||||||||| |||||||||| ||||||||||| |||||  |||||||| |||||||||||    
T  42570092 tctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaataaaatttagctt 42569993  T
Q  169 caaacatacttgaaacttgatcaat-cttcttataaaaag 207  Q
    |||  |||||| ||||||| |||||  |||||||||||||    
T  42569992 caatgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 17855533 - 17855397
Alignment:
Q  74 gaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaac 173  Q
    |||||||| ||||||| ||||| ||   ||||| |||||| |||||||||||| ||| |||||| || |||||||  ||||||||||||||| ||| |||    
T  17855533 gaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaac 17855434  T
Q  174 atacttgaaacttgatcaat-cttcttataaaaagga 209  Q
    | |||| ||| ||| |||||  |||||||||||||||    
T  17855433 acacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  86 attacttactctttattccataaacttacttacttttaatattatctc---tcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaa 182  Q
    |||| |||||||| ||||||  ||||||||||||||||||||| ||||   | ||||| ||||||| |||||||||||||||||||| |||| | |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttgaa 36741814  T
Q  183 a 183  Q
    |    
T  36741815 a 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 45177546 - 45177598
Alignment:
Q  8 ccaagaaaata-cattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  45177546 ccaagaaaataacattgaaaatagtcatcttcatttaatacacttctacattt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 6530398 - 6530479
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||| |||||||||||||||||   |||||   ||||||||||||||| ||||||| |  |||||||||| |||||||    
T  6530398 tatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccctta 6530479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 8114332 - 8114292
Alignment:
Q  298 cttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  8114332 cttaacatgtgcccttagggcacaagttaacatgaccctta 8114292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 1553966 - 1553716
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||| ||||||||||||||| ||||||||||||||||     
T  1553966 ccaagaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaa-ttctataaatacccttaaattaattactctttattccatc 1553868  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  1553867 aacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaa 1553768  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||       |||||| ||||||||||||||||||||||||||||||||||    
T  1553767 ggaccacaaaaattctca-ttttgtttctaataaaaaggaccggagggagtat 1553716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 27332899 - 27333131
Alignment:
Q  25 aaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttacttttaa 124  Q
    |||||||||| ||||||||||||||||||| ||||        |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaa-ttctataaatacccttaaattaattactctttattccattaacttacttacttttaa 27332997  T
Q  125 tattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctca 224  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||    
T  27332998 tattttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctca 27333097  T
Q  225 cttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||| ||||    
T  27333098 cttttgtttctaataaaaaggaccggaggaagta 27333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 16130456 - 16130708
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnt-tctatgaatacccttaaattacttactctttattccata 107  Q
    |||| |||||||||||||||||| || |||||||||||||| |||||||||          || |||||||||||||||||| ||||| |||||||||      
T  16130456 caaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaaatccatgaatacccttaaattaattactttttattccacc 16130555  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  16130556 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 16130655  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||       || ||||||||||||||||||||||||||||||||||||||    
T  16130656 ggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagtat 16130708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 35050249 - 35050483
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||           |||| |||||||||||||| |||||||||||| ||| |    
T  35050249 caagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaa-tatgtatacccttaaattaattactctttatttcatca 35050347  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||     
T  35050348 acttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaaacttgatcgatctttttataaaaaga 35050447  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaag 244  Q
    |||       ||||||||||||||||||||||||||    
T  35050448 accaaaaaaattctcacttttgtttctaataaaaag 35050483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 30222942 - 30222692
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||        |  |||||||| |||||||||| |||||||||| |||||     
T  30222942 ccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaagta-tatgaatatccttaaattaattactctttaatccatc 30222844  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||||||||||||||||||| ||| ||||||||||||||  |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||     
T  30222843 aacttacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaatcttcttataaaaat 30222744  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    || |       |||||| |||||||||||||||||||||||||||| |||||    
T  30222743 gatcaaaaaaattctcatttttgtttctaataaaaaggaccggaggtagtat 30222692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 45192517 - 45192768
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||        ||| |||||||||||||||||| |||||||||||||||| |    
T  45192517 caagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaa-ttccatgaatacccttaaattaattactctttattccatca 45192615  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    ||||||||| |||||||||| | ||||||||| ||||||  |||||||||| |||||| | ||| ||| | ||||||| |||||||||||||||||||||    
T  45192616 acttacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaaaaatattagaaacttaatcaatcttcttataaaaagg 45192715  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    | |       ||||||||||||||||||||||||||||||||||| |||||||    
T  45192716 atcaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagtatat 45192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 16129970 - 16130158
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| ||||| |||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16129970 atgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 16130069  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||    
T  16130070 acatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagtat 16130158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 5800381 - 5800629
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| |||         ||| |||||||||| ||||||| || ||||||||||||      
T  5800381 ccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatatt-aaaaaaaattc-atgaatacccctaaattaatttctctttattccact 5800478  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||| ||||||||||| || ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  5800479 aacttatttacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatacttgaaacttggtcaatcttcttataaaaag 5800578  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||       ||| |||||||||||||||||||||||| | |||||||||    
T  5800579 gaccaaaaaaattcccacttttgtttctaataaaaaggaactgagggagta 5800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 27654854 - 27654604
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||| ||||        ||| || || |||| ||||||| |||||||||||||||      
T  27654854 ccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaa-ttccattaaaacccctaaattaattactctttattccacc 27654756  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||  ||||||||||||    
T  27654755 aacttacttacttttaatatt--ctctcataataaataagggcacaaatgaaatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaa 27654658  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||    
T  27654657 ggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtata 27654604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 40988011 - 40988262
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| ||||||||||||||       
T  40988011 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattcaatgaatacccctaaattaattactctttattccgcc 40988110  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaa 206  Q
    |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  ||||||||||||    
T  40988111 aacttacttacttttaatatt--ctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaa 40988208  T
Q  207 ggacc-nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||           ||||||||||||||||||||||||||||||||||||||    
T  40988209 ggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagtat 40988262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 9411909 - 9411731
Alignment:
Q  78 acccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatac 177  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  178 ttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggaggga 255  Q
    |||||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||| ||||||||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggga 9411731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 27846586 - 27846418
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| |||||| ||||||||||| || ||||||||||||||||||||||||        ||| ||||||| |||||||||| ||||| | |||||||      
T  27846586 ccaaggaaatactttgaaaatagttatcttcatttaatacacttctacatttaaaaacaattccatgaatatccttaaattaattactatctattccacc 27846487  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacata 176  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  27846486 aacttacttacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 36834474 - 36834287
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||        ||| |||||||||  ||||||| |||||||||||||||  ||||||    
T  36834474 aaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaat-ttc-atgaatacc--taaattaattactctttattccaccaactta 36834379  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||||||||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  36834378 cttacttttaatatt--ctcttataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaattttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 34546834 - 34546650
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||||||||||||||  | ||||||||| |||||||||| |||||||| ||||||||||    
T  34546834 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaa 34546738  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||| |||||||||||||  || ||||||||| |||        ||||||||||| ||||||||||||||||| | ||||||||    
T  34546737 acatacttaaaacttgatcaatattttttataaaaaagacaaaaaaaattctcacttttatttctaataaaaaggacggaagggagta 34546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 4813694 - 4813946
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||| |||||||| || |||||||||||||| ||| |||||        ||| ||||||||| |||||||| ||||| || ||||||      
T  4813694 ccaaggaaatacattaaaaatagttatcttcatttaatacacctctccatttaaatagttttccatgaatacctttaaattaattacttttcattccacc 4813793  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatc-aatcttcttataaaaa 206  Q
    |||||||||||||||||||||   ||||||||| |||||||||||||||||||||||| ||||| || |||| ||| ||| || ||  ||||  |||||     
T  4813794 aacttacttacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaaaattggtcaaagtttctcgtaaaat 4813893  T
Q  207 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||        |||||||||||||||| ||||||||||||||| |||||||    
T  4813894 ggaccaaaaaaaatctcacttttgtttcttataaaaaggaccggatggagtat 4813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 35121293 - 35121170
Alignment:
Q  136 ataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttct 235  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       ||| ||| |||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttct 35121194  T
Q  236 aataaaaaggaccggagggagtat 259  Q
    |||||||| || ||| ||||||||    
T  35121193 aataaaaatgatcggggggagtat 35121170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 13879068 - 13879235
Alignment:
Q  80 ccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatactt 179  Q
    |||||||||| ||||||||| |||||  |||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||           |||    
T  13879068 ccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttag-----------ctt 13879156  T
Q  180 gaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
     ||||||||||||||||||| |||||||||||        | ||||||||||||||||||||||||| |||||||||||    
T  13879157 taaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggatcggagggagta 13879235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 35428553 - 35428415
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattcc---- 104  Q
    |||||||||||||||||||||||||| ||||||||| || |||||| ||||        || ||||||||||||||||||| ||||||||||||||        
T  35428553 caagaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaaaatttt-tatgaatacccttaaattaattactctttattccatca 35428455  T
Q  105 ataaacttacttacttttaatattatctctcataatcaat 144  Q
    || |||||||||||||||||| || |||||||||||||||    
T  35428454 atcaacttacttacttttaattttctctctcataatcaat 35428415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 23933261 - 23933512
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    |||| ||||||||||||||||| | || ||| ||||||| || |||||||||        ||| |||||||||| ||||||| |||||||| |||| |      
T  23933261 ccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttc-atgaatacccctaaattaattactcttgattctacc 23933359  T
Q  108 aacttacttactttt-aatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaa 205  Q
    ||||| |||| |||| |||||| ||||  ||||| ||||||||||||||||||||||| ||||||||| | |||||| ||| |||||  || |||||| |    
T  23933360 aactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaacacatttgaaaattggtcaatgtttattataata 23933459  T
Q  206 aggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
     ||||        || ||||||||||||||||||||| ||| | |||||||||    
T  23933460 tggactaacaaaattttcacttttgtttctaataaaatggatcagagggagta 23933512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 11908063 - 11907972
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttag 165  Q
    ||||||||| ||| |||| |||||||| ||||||  |||||| ||| |||||||| |  |||||||||| ||||| | ||||||||||||||||    
T  11908063 atgaatacctttacattaattactcttgattccaccaacttatttatttttaatact--ctctcataataaataaagacacaaatgaaatttag 11907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 35121392 - 35121301
Alignment:
Q  13 aaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattcca 105  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||         |  |||||||||||||||||| || ||||||||||||    
T  35121392 aaaatacattggaaatagtcatcttcatttaatacacttc-acatttaaaaaaaaattcatgaatacccttaaattaattcctctttattcca 35121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 16129902 - 16129952
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    |||| |||||||||||||||||| || |||||||||||||| | |||||||    
T  16129902 caaggaaatacattgaaaatagttatcttcatttaatacacctttacattt 16129952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 35428420 - 35428357
Alignment:
Q  188 atcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
    ||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||    
T  35428420 atcaatcttcttataaaaaggataaaaaaaattctcacttttgtttttaataaaaaggaccgga 35428357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 41884687 - 41884610
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    ||||| ||||||||||||||||||| |  || | | ||| ||||||||||||| ||| |||  |||||||||||||||    
T  41884687 atattttattttccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaacattaccc 41884610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 1365890 - 1365644
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || |||||||||||||  |||||||||        ||| |||||||||||||||||| |||||||||||||||  ||||||    
T  1365890 aaatacattgaaaatagttatcttcatttaatacatctctacatttacaaaaaattccatgaatacccttaaattaattactctttattccaccaactta 1365791  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||     
T  1365790 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 1365691  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
          |||||||||||||||||||||||||||||||||||||||||    
T  1365690 acaaaattctcacttttgtttctaataaaaaggaccggagggagtat 1365644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 24338018 - 24338206
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    ||||||| || ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  24338018 atgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 24338117  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| |||||  |||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||    
T  24338118 acatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 24338206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 7243365 - 7243602
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || |||||||||||||| |||||||||        | | |||||||||| ||||||| ||| |||||||||||  ||||||    
T  7243365 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatcc-atgaatacccctaaattaattattctttattccaccaactta 7243463  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccn 212  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||| ||||     
T  7243464 cttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagacca 7243563  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
          ||||||||||||||| |||||||||||||||||    
T  7243564 aaaaagttctcacttttgtttataataaaaaggaccgga 7243602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 21262900 - 21263090
Alignment:
Q  68 ttctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagct 167  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||    
T  21262900 ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagct 21262999  T
Q  168 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||    
T  21263000 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggagggagta 21263090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 40385185 - 40385430
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||         || |||||||||| ||||||| || ||||||||||||  |||||| |    
T  40385185 atacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatt 40385284  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaa---tcttcttataaaaaggaccn 212  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||     
T  40385285 tacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggacca 40385384  T
Q  213 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
          ||||||||||||||||||||||||||||||||||| ||||    
T  40385385 aaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 40385430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 33314578 - 33314327
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccata 107  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| ||||||| ||        ||| |||||||  | ||||||| |||||||||||||||      
T  33314578 ccaaggaaatacattgaaaatggtcatcttcatttaatacatttctacacttaaaaaaatttc-atgaatattcctaaattaattactctttattccacc 33314480  T
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    ||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33314479 aacttgcttacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaag 33314380  T
Q  208 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
    ||||        |||||||||||||| ||||||||||||| ||||||||||||    
T  33314379 gaccaaaaataatctcacttttgtttataataaaaaggactggagggagtata 33314327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 41174604 - 41174851
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataa 108  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||| ||||         |  |||||||||| | ||||| || ||||||||| ||  |    
T  41174604 caaggaaatacattgaaaatagtcatcttcatttaatatacttctatattttaaaaaaaattcatgaatacccctcaattaattcctctttatttcacta 41174703  T
Q  109 acttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 208  Q
    ||||| ||||||||||  || ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  41174704 acttatttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaagg 41174803  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggag 256  Q
    |||       |||||||||||||||||| |||||||||||||||||||    
T  41174804 accaaaaaaattctcacttttgtttctattaaaaaggaccggagggag 41174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 3097491 - 3097754
Alignment:
Q  9 caagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnt---tctatgaatacccttaaattacttactctttattcca 105  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||            || ||| |||||| |||||||  | ||||||||||||    
T  3097491 caaggaaatacattgaaaatagtaatcttcatttaatacacttctacatttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattcca 3097590  T
Q  106 taaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaa 205  Q
      |||||| ||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3097591 ctaacttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaa 3097690  T
Q  206 aggac-cnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatattatattt 268  Q
    |||||          |||||||||||||||||||||||||||||||||||| || |||| ||||    
T  3097691 aggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggagggattacattaaattt 3097754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 24868715 - 24868466
Alignment:
Q  10 aagaaaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    |||||||||||||||||||||| || |||||||||||||| |||| | ||        ||| || || |||| ||||||| |||||||||||||||  ||    
T  24868715 aagaaaatacattgaaaatagtaatcttcatttaatacacctctataattaagaaaa-ttccattaacacccctaaattaattactctttattccaccaa 24868617  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaagg 208  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||  |||||||||||| |    
T  24868616 cttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaag 24868517  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||        ||||||||||||||||||||||||||||  |||||||||||    
T  24868516 acaaaaaaaattctcacttttgtttctaataaaaaggatgggagggagtat 24868466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 4238039 - 4237918
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| |||||||| ||||||  || ||||||  ||||| |||| | ||||||||| ||||| ||||||||||||||||| ||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaa 4237940  T
Q  172 acatacttgaaacttgatcaat 193  Q
    |||| | ||||| || ||||||    
T  4237939 acatccatgaaaatttatcaat 4237918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 21262545 - 21262596
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  21262545 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 21262596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 2934953 - 2935034
Alignment:
Q  130 tctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatc-ttcttataaaaaggac 210  Q
    ||||||||||| |||||||| | |||||||||||| ||||||| | |||| ||| ||| | |||| ||||||||||||||||    
T  2934953 tctctcataataaataagggtataaatgaaatttaacttcaaatacacttaaaaattggtaaatctttcttataaaaaggac 2935034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 6949 - 6700
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnntt-ctatgaatacccttaaattacttactctttattccataaactt 112  Q
    |||||||||||||||||| || |||||||||||||  |||||||||        || ||||||||| |||||||||| ||||||||||||| |  |||||    
T  6949 aaatacattgaaaatagttatcttcatttaatacatctctacatttaatttttttttctatgaatatccttaaattaattactctttattctaccaactt 6850  T
Q  113 acttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggacc 211  Q
    |||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||    
T  6849 acttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacc 6750  T
Q  212 nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
           || | |||||||||||||||||||||||||||| |||||||||    
T  6749 aaattttttttaacttttgtttctaataaaaaggaccggatggagtatat 6700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 106 - 261
Target Start/End: Original strand, 258356 - 258512
Alignment:
Q  106 taaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaa 204  Q
    |||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||    
T  258356 taaacttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaa 258455  T
Q  205 aaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    |||||||       ||||||||||||||||||||||||||||||||| |||||||||    
T  258456 aaggacctaaaaaattctcacttttgtttctaataaaaaggaccggatggagtatat 258512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 258268 - 258319
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||| ||||    
T  258268 ccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatattt 258319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 30654 - 30477
Alignment:
Q  14 aaatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    |||||||||||||||||| || || ||||||||||| ||| |||||        ||| || ||||||| ||||||| |||||||| |||||   ||||||    
T  30654 aaatacattgaaaatagttattttaatttaatacacctctgcatttaaatttt-ttccataaatacccctaaattaattactcttgattccgccaactta 30556  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaa 192  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||| |||||||| ||| ||||    
T  30555 cttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaacttgaaaattggtcaa 30477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 19354 - 19315
Alignment:
Q  227 tttgtttctaataaaaaggaccggagggagtatattatat 266  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  19354 tttgtttcttataaaaaggaccggaggaagtatattatat 19315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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