View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_35 (Length: 532)

Name: NF0928_low_35
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_35
NF0928_low_35
[»] chr6 (12 HSPs)
chr6 (287-532)||(13693353-13693598)
chr6 (115-216)||(13673979-13674080)
chr6 (130-202)||(8143840-8143912)
chr6 (463-529)||(13672954-13673020)
chr6 (130-196)||(21089058-21089124)
chr6 (130-216)||(19753814-19753902)
chr6 (141-202)||(28068324-28068385)
chr6 (130-202)||(21067267-21067339)
chr6 (450-506)||(13686915-13686971)
chr6 (117-215)||(16193921-16194016)
chr6 (99-135)||(23591508-23591544)
chr6 (114-151)||(33396487-33396524)
[»] chr8 (12 HSPs)
chr8 (112-211)||(8605392-8605491)
chr8 (99-215)||(38287826-38287943)
chr8 (99-202)||(39587947-39588048)
chr8 (103-247)||(17607307-17607441)
chr8 (133-202)||(21653465-21653534)
chr8 (133-202)||(21653626-21653695)
chr8 (99-215)||(9596082-9596198)
chr8 (99-140)||(14582204-14582245)
chr8 (99-154)||(20232486-20232543)
chr8 (99-135)||(15711474-15711511)
chr8 (158-202)||(3183833-3183877)
chr8 (99-135)||(39588176-39588212)
[»] chr2 (18 HSPs)
chr2 (100-215)||(10861924-10862037)
chr2 (99-215)||(10862204-10862321)
chr2 (130-202)||(3976897-3976969)
chr2 (114-215)||(936937-937037)
chr2 (136-215)||(28193478-28193554)
chr2 (128-201)||(14289059-14289132)
chr2 (130-199)||(21214095-21214164)
chr2 (99-199)||(15961889-15961990)
chr2 (99-178)||(11349882-11349963)
chr2 (99-172)||(32197143-32197217)
chr2 (100-178)||(11350277-11350357)
chr2 (141-202)||(17508932-17508993)
chr2 (130-202)||(3976680-3976751)
chr2 (130-202)||(3976365-3976437)
chr2 (128-215)||(15962054-15962136)
chr2 (157-204)||(32197044-32197091)
chr2 (95-135)||(30622155-30622195)
chr2 (95-135)||(30624776-30624816)
[»] chr3 (23 HSPs)
chr3 (99-211)||(22666407-22666519)
chr3 (100-195)||(10453793-10453888)
chr3 (116-198)||(2799923-2800005)
chr3 (129-215)||(16033193-16033279)
chr3 (99-215)||(48511499-48511618)
chr3 (99-215)||(9180266-9180383)
chr3 (130-202)||(50056977-50057049)
chr3 (99-178)||(10450513-10450594)
chr3 (129-215)||(16051428-16051514)
chr3 (130-202)||(44573464-44573536)
chr3 (129-199)||(16045265-16045335)
chr3 (129-215)||(16060778-16060864)
chr3 (130-195)||(4256064-4256128)
chr3 (99-215)||(9179254-9179371)
chr3 (99-178)||(40770001-40770081)
chr3 (99-193)||(9179054-9179148)
chr3 (128-202)||(44573777-44573851)
chr3 (130-195)||(4255882-4255946)
chr3 (130-202)||(14170209-14170281)
chr3 (99-134)||(51734646-51734681)
chr3 (130-191)||(4255659-4255719)
chr3 (99-133)||(10453974-10454008)
chr3 (99-136)||(2800050-2800087)
[»] chr7 (16 HSPs)
chr7 (99-213)||(36270559-36270674)
chr7 (99-215)||(37756027-37756144)
chr7 (99-202)||(43384143-43384245)
chr7 (102-195)||(14742706-14742798)
chr7 (99-215)||(36495791-36495904)
chr7 (99-198)||(47346183-47346283)
chr7 (106-202)||(11469768-11469863)
chr7 (130-202)||(40121828-40121900)
chr7 (130-196)||(30296457-30296523)
chr7 (99-198)||(24240267-24240366)
chr7 (130-202)||(41670690-41670762)
chr7 (99-146)||(36092481-36092528)
chr7 (104-202)||(11470007-11470104)
chr7 (115-185)||(19843635-19843705)
chr7 (104-164)||(11469579-11469639)
chr7 (99-154)||(44314393-44314450)
[»] chr4 (11 HSPs)
chr4 (103-215)||(46529016-46529126)
chr4 (116-215)||(52810732-52810831)
chr4 (130-202)||(50858150-50858222)
chr4 (130-202)||(29669572-29669644)
chr4 (130-202)||(45427146-45427218)
chr4 (130-202)||(990861-990933)
chr4 (99-216)||(37288727-37288845)
chr4 (141-202)||(53740004-53740065)
chr4 (130-202)||(51469619-51469690)
chr4 (181-215)||(21644550-21644584)
chr4 (121-204)||(42901727-42901808)
[»] chr1 (11 HSPs)
chr1 (99-215)||(29228573-29228690)
chr1 (103-215)||(45858780-45858890)
chr1 (99-215)||(30604549-30604666)
chr1 (99-215)||(17294768-17294882)
chr1 (99-198)||(4187371-4187474)
chr1 (99-178)||(17294912-17294993)
chr1 (142-215)||(27957953-27958026)
chr1 (130-202)||(20735660-20735732)
chr1 (130-202)||(19614149-19614223)
chr1 (101-133)||(28816873-28816905)
chr1 (114-154)||(31411464-31411504)
[»] chr5 (12 HSPs)
chr5 (103-215)||(18541847-18541961)
chr5 (130-202)||(13843835-13843907)
chr5 (99-214)||(22196415-22196531)
chr5 (130-202)||(27760213-27760285)
chr5 (99-214)||(33040371-33040485)
chr5 (99-213)||(33040187-33040300)
chr5 (130-202)||(1028302-1028374)
chr5 (111-211)||(35758733-35758832)
chr5 (99-178)||(83899-83980)
chr5 (102-195)||(17584280-17584372)
chr5 (99-215)||(946789-946905)
chr5 (130-202)||(17016301-17016373)
[»] scaffold0012 (1 HSPs)
scaffold0012 (102-185)||(165712-165796)
[»] scaffold0785 (1 HSPs)
scaffold0785 (99-215)||(2985-3099)
[»] scaffold0013 (1 HSPs)
scaffold0013 (98-134)||(18290-18326)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 287 - 532
Target Start/End: Complemental strand, 13693598 - 13693353
Alignment:
Q  287 gctgctgtacaattacatttgaagccatgttagtagcaattcttcgcaatattaaagatcttatcgcataataaaaccttgccaaaattacattccaata 386  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13693598 gctgctgtacaattacatttgaagccatgttagtagcaactcttcgcaatattaaagatcttatcgcagaataaaaccttgccaaaattacattccaata 13693499  T
Q  387 gataagcaaaactgaacatattaaagtatagaatgacatttcagttattttatttaagcgacatacctctggttcgagttcatagaatgtgtttgcaaga 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13693498 gataagcaaaactgaacatattaaagtatagaatgacatttcagttattttatttaagcgacatacctctggttcgagttcatagaatgtgtttgcaaga 13693399  T
Q  487 atccaatctgctttaccaatgttggaagattgatccacaactacgt 532  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  13693398 atccaatctgctttaccaatgttggaaaattgattcacaactacgt 13693353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 13674080 - 13673979
Alignment:
Q  115 cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctc 214  Q
    |||||||||||  ||||| || ||| |||| ||||||||| |||||||||||||||||| ||||  |||| | ||||||||||||||| |||||||||||    
T  13674080 cgagtgttggccactaacgcatcccctcacacttcagcccaacccaatgggcctgaagcgtggatgatgccgaaagcccaacgatagatctgataggctc 13673981  T
Q  215 ta 216  Q
    ||    
T  13673980 ta 13673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 8143912 - 8143840
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| || ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  8143912 aacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaataga 8143840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 13672954 - 13673020
Alignment:
Q  463 agttcatagaatgtgtttgcaagaatccaatctgctttaccaatgttggaagattgatccacaacta 529  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||  |||||||    
T  13672954 agttcataaaatgtgtttgcaagaatccaatcagctttaccaatgtttgaaaattgattgacaacta 13673020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 21089058 - 21089124
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  21089058 aacacaccccctcacgctccagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaac 21089124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 19753814 - 19753902
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacct--gataggctcta 216  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||| ||| |||| ||||| |||| |||||| ||  |||||||||||    
T  19753814 aacacacaccctcacgcttcagcccggcccaatgggcctgaagcattgacgatgcgggaagaccaatgatagatctaggataggctcta 19753902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 28068324 - 28068385
Alignment:
Q  141 tcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||  |||||||||||||||||    
T  28068324 tcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccaacgataga 28068385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 21067267 - 21067339
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||  ||||||||||| |||||    
T  21067267 aacacaccccctcacgctccagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccaacaataga 21067339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 13686971 - 13686915
Alignment:
Q  450 tacctctggttcgagttcatagaatgtgtttgcaagaatccaatctgctttaccaat 506  Q
    ||||||||||||||||||||| |  | |||||||||||||||||| |||||||||||    
T  13686971 tacctctggttcgagttcataaatcgagtttgcaagaatccaatcagctttaccaat 13686915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 16194016 - 16193921
Alignment:
Q  117 agtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    ||||||||| |||| |||||||| ||||||||||||||   ||||||| |||||||| ||||| ||||   |||||||||||| |||| ||||| ||||    
T  16194016 agtgttggccgctagcacaccccctcacgcttcagccccgtccaatggacctgaagcgtggactatgc---aagcccaacgatggacccgatagactct 16193921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 23591544 - 23591508
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacaca 135  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23591544 gtgggattaaatccaccgagtgttggctgctaacaca 23591508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 33396524 - 33396487
Alignment:
Q  114 ccgagtgttggctgctaacacaccccttcacgcttcag 151  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  33396524 ccgagtgttggccgctaacacaccccgtcacgcttcag 33396487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 8605491 - 8605392
Alignment:
Q  112 caccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgatagg 211  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||| |||| ||||||    
T  8605491 caccgagtgttggccgctaacacaccccctcacgcttcagcccggcccaatgggcctgaatcgtggacgatgcaggaagcccaacgatggacccgatagg 8605392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 38287826 - 38287943
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| |||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||| || ||||||||||    
T  38287826 gtgggactaaatcccaccgagtgttggcccctaacacaccccctcacgcttcagcccgatccaatgggcctgaagcgtggacgatgtagaaagcccaacg 38287925  T
Q  198 atagacctgataggctct 215  Q
    || ||||  |||||||||    
T  38287926 atggacccaataggctct 38287943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 39587947 - 39588048
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacga 198  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||  ||| ||||  | ||||||||||||||||    
T  39587947 gtgggactaaatccactgagtgttggctgctaacacaccccctcacgcttcagcctggcccaatgggcct--agcgtggatgaggcaggaagcccaacga 39588044  T
Q  199 taga 202  Q
    ||||    
T  39588045 taga 39588048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 17607307 - 17607441
Alignment:
Q  103 gactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatag 201  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||| ||||||| |||| ||||  ||||   ||||||||| || |    
T  17607307 gactaaatccactcgagtgttggccgctaacacacccc-tcacgcttcagctcggcccattgggcctaaagcgtggatgatgc---aagcccaacaattg 17607402  T
Q  202 acctgataggctctaggctctgataccatgtcatgaatattggctt 247  Q
    ||| ||       |||||||||||||||||||||||||||||||||    
T  17607403 acccga-------taggctctgataccatgtcatgaatattggctt 17607441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 21653534 - 21653465
Alignment:
Q  133 acaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| ||||||||||||||| |||||||| |||||||| ||||| |||| |||||||||||||||||    
T  21653534 acaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcgggaagcccaacgataga 21653465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 21653695 - 21653626
Alignment:
Q  133 acaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| ||||||    
T  21653695 acaccccctcacgcttcagcccggcccaatggtcctgaagcgtggacgatgcaggaagcccaatgataga 21653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 9596082 - 9596198
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||| ||||||||| ||||||||||||| ||||||||||| | ||| ||||||    | || ||| ||| |||||| ||||| ||||||||||||||||     
T  9596082 gtggaactaaatcccaccgagtgttggccgctaacacacctcctcatgcttcaagggggcc-aataggcttgaagcgtggacgatgcaggaagcccaaca 9596180  T
Q  198 atagacctgataggctct 215  Q
    ||||||| |||| |||||    
T  9596181 atagacccgataagctct 9596198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 14582245 - 14582204
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacacccct 140  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  14582245 gtgggactaaatccacttagtgttggctgctaacacacccct 14582204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 20232486 - 20232543
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagccc 154  Q
    ||||||||||||||   |||||||||||| |||||||||| || ||||||||||||||    
T  20232486 gtgggactaaatcccacccgagtgttggccgctaacacacaccctcacgcttcagccc 20232543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 15711511 - 15711474
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacaca 135  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15711511 gtgggactaaatcccaccgagtgttggctgctaacaca 15711474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 3183833 - 3183877
Alignment:
Q  158 ccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||||| |||||| || ||||||||||||||||||| |||||    
T  3183833 ccaatgggcttgaagcgtgaacaatgcaggaagcccaacaataga 3183877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 39588176 - 39588212
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacaca 135  Q
    |||||||||||||||  ||||||||||||||||||||    
T  39588176 gtgggactaaatccattgagtgttggctgctaacaca 39588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 10861924 - 10862037
Alignment:
Q  100 tgggactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacga 198  Q
    ||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||   |||||||||||    
T  10861924 tgggactaaatcccctcgagtgttggccgctaacacaccccctcacgcttcagcccgacccaatgggcctgaagcgtggacgatgc---aagcccaacga 10862020  T
Q  199 tagacctgataggctct 215  Q
    | |||| ||||||||||    
T  10862021 tggacccgataggctct 10862037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 10862321 - 10862204
Alignment:
Q  99 gtgggactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| | ||||||||||| ||||||||||||| | ||||||||||||| ||||||||||| ||||| || || ||||||||||| |||||    
T  10862321 gtgggactaaatcccctcgagtgttggccgctaacacacccccttacgcttcagcccggcccaatgggccagaagcgtgaacgatgcaggaagctcaacg 10862222  T
Q  198 atagacctgataggctct 215  Q
    || |||| ||||||||||    
T  10862221 atggacccgataggctct 10862204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 3976897 - 3976969
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3976897 aacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacaatgcaggaagcccaacgataga 3976969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 937037 - 936937
Alignment:
Q  114 ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggct 213  Q
    ||||| |||||| || |||||||||| ||||||||||||||| ||||||||||||||||| ||||  ||| ||||||||||||||| |||| ||||||||    
T  937037 ccgagagttggccgccaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgtaggaagcccaacgatggacccgataggct 936939  T
Q  214 ct 215  Q
    ||    
T  936938 ct 936937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 28193478 - 28193554
Alignment:
Q  136 ccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||   ||||||||||||||||||||||||||||    
T  28193478 ccccctcacgcttcagcccgacccaatgggcctgaagcgtggacgatgc---aagcccaacgatagacctgataggctct 28193554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 14289132 - 14289059
Alignment:
Q  128 ctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatag 201  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  14289132 ctaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtaggaagcccaaagatag 14289059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 21214095 - 21214164
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgat 199  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  21214095 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgat 21214164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 15961889 - 15961990
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||||| ||||||||||||| |||||||||||||||  |||||||||||||||| ||||  |||||||||||||| |    
T  15961889 gtgggactaaatcccacccgagagttggccgctaacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga-gatgcaggaagcccagc 15961987  T
Q  197 gat 199  Q
    |||    
T  15961988 gat 15961990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 11349882 - 11349963
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    ||||||||||||||   |||||||||||||||||||||||||| ||||||||| ||||  ||||||||||||||||| ||||    
T  11349882 gtgggactaaatcccacccgagtgttggctgctaacacaccccctcacgcttcggcccagcccaatgggcctgaagcgtgga 11349963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 32197217 - 32197143
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaag 172  Q
    |||||||||||||| | ||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  32197217 gtgggactaaatcccatcgagtgttggccgctaacataccccctcacgcttcagcccggcccaatgggcctgaag 32197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 11350277 - 11350357
Alignment:
Q  100 tgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    |||||||||||||   ||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||| ||||    
T  11350277 tgggactaaatcccacccgagtgttggctgctaacaccccccgtcacgcttcagcccagcccaatgggcctgaagcgtgga 11350357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 17508993 - 17508932
Alignment:
Q  141 tcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||||||| |||||||||||||||||| |||||||||  | |||||||||||||||    
T  17508993 tcacgcttcagcccaacccaatgggcctgaagcgtggacaatgtggaaagcccaacgataga 17508932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 3976680 - 3976751
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| |||| |||||||||||||||||    
T  3976680 aacacacccct-cacgcttcggcccggcccaacgggcctgaagcgtggacgatgcgggaagcccaacgataga 3976751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 3976365 - 3976437
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| | || |||||||||| ||||| ||||||||||| ||||| |||  |||||||||||||||||    
T  3976365 aacacaccccctaacacttcagcccggcccaacgggcctgaagcgtggacgatgtgggaagcccaacgataga 3976437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 15962054 - 15962136
Alignment:
Q  128 ctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| ||||      | ||||||||||||| |||| ||||||||||    
T  15962054 ctaacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga-----gatgaagcccaacgatggacccgataggctct 15962136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 32197091 - 32197044
Alignment:
Q  157 cccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacc 204  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  32197091 cccaatgggcctgaagcatggatgatgcaggaagcccaacgatggacc 32197044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 30622155 - 30622195
Alignment:
Q  95 cgaagtgggactaaatccaccgagtgttggctgctaacaca 135  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  30622155 cgaagtggaattaaatccaccgagtgttggctgttaacaca 30622195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 30624776 - 30624816
Alignment:
Q  95 cgaagtgggactaaatccaccgagtgttggctgctaacaca 135  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  30624776 cgaagtggaattaaatccaccgagtgttggctgttaacaca 30624816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 22666407 - 22666519
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacga 198  Q
    ||||||||||||| || || ||||| |||||||||||| || ||||||||||||||| ||||| ||||||||| | ||||| ||||||||||||||||||    
T  22666407 gtgggactaaatctactgaatgttgactgctaacacacaccctcacgcttcagcccggcccaacgggcctgaaacgtggacgatgcaggaagcccaacga 22666506  T
Q  199 tagacctgatagg 211  Q
    |||||| ||||||    
T  22666507 tagacccgatagg 22666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 10453793 - 10453888
Alignment:
Q  100 tgggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| |||||||| | | ||||||||| ||||| ||||| |||||||||||||||    
T  10453793 tgggactaaatccaccaagtgttggctgctaacacaccccctcacacttcagcctggcacaatgggccagaagcgtggacgatgcaggaagcccaa 10453888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 2799923 - 2800005
Alignment:
Q  116 gagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacga 198  Q
    |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||||  ||||||||||||||||||    
T  2799923 gagtgttggctgctaatacaccccctcatgcttcagcccggcccaatgggcctgatgcatggatgatgcaggaagcccaacga 2800005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 16033193 - 16033279
Alignment:
Q  129 taacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    |||||||| || |||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||    
T  16033193 taacacacaccctcacgcttcagcccggtccaatgggcctgaagcgtggacaatgcaggaagcccagcgatggacctaataggctct 16033279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 48511499 - 48511618
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacac--cccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagccca 194  Q
    ||||||||||||||   ||||| |||||| ||||||||||  ||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||    
T  48511499 gtgggactaaatcccacccgagagttggccgctaacacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgcaggaagccca 48511597  T
Q  195 acgatagacctgataggctct 215  Q
    ||||| |||| ||||||||||    
T  48511598 acgatggacccgataggctct 48511618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 9180383 - 9180266
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| | |||| |||||| ||||||||||||  ||||||||||||||  ||||||||||||| | | ||||| |||| ||||||||||||    
T  9180383 gtgggactaaatccgatcgagggttggccgctaacacacccactcacgcttcagcccagcccaatgggcctggatcgtggacgatgctggaagcccaacg 9180284  T
Q  198 atagacctgataggctct 215  Q
    || |||| ||||||||||    
T  9180283 atggacccgataggctct 9180266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 50057049 - 50056977
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  50057049 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgataga 50056977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 10450513 - 10450594
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    ||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||    
T  10450513 gtgggactaaatcccacccgagtgttggctgctaacacaccccctcacgcttcagcccggcacaatgggcctgaagcgtgga 10450594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 16051428 - 16051514
Alignment:
Q  129 taacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    ||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||||    
T  16051428 taacacacccccttacgtttcagcacggcccaatgggcctgaagcatggacgatgcaggaagcccaacgatggacccaataggctct 16051514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 44573536 - 44573464
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||  |||||||| ||||||||    
T  44573536 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtgggaagcccgacgataga 44573464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 16045265 - 16045335
Alignment:
Q  129 taacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgat 199  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||| ||||| ||||| |||||||||||||    
T  16045265 taacacaccccctcacgtttcagcacggcccaatgggcctgaagcgtggacgatgcaagaagcccaacgat 16045335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 16060778 - 16060864
Alignment:
Q  129 taacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||| ||||| ||||| ||||||||| ||| ||||  |||||||||    
T  16060778 taacacaccccctcacgtttcagcacggcccaatgggcctgaagcgtggacgatgcaagaagcccaaagatggacccaataggctct 16060864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 4256128 - 4256064
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    ||||||| || |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  4256128 aacacacaccctcacgcttcagcccgacccaat-ggcctgaagcgtggacaatgcgggaagcccaa 4256064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 9179371 - 9179254
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||| ||||||| |||||| |||||||||||||||| ||| |||| |||||||||  |||||||||| |||| | | ||| |||| ||||| |||||     
T  9179371 gtgggagtaaatccgaccgagggttggctgctaacacatcccctcacacttcagccccgcccaatgggcttgaatcgtcgacgatgctggaagaccaaca 9179272  T
Q  198 atagacctgataggctct 215  Q
    || |||| ||||||||||    
T  9179271 atggacccgataggctct 9179254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 40770001 - 40770081
Alignment:
Q  99 gtgggactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    |||||||||||||| | ||||||||||| ||||||||||||| |||||||| |||||  |||||||| |||||||| ||||    
T  40770001 gtgggactaaatcccctcgagtgttggccgctaacacaccccctcacgctttagcccagcccaatggacctgaagcgtgga 40770081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 9179148 - 9179054
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagccc 193  Q
    |||||||||||||| ||||||||||||| |||||| ||||  | |||||||||| ||| |||||||||||| |||| ||||  |||||||||||||    
T  9179148 gtgggactaaatcccaccgagtgttggccgctaacgcacctgt-cacgcttcagtccggcccaatgggcctaaagcgtggatgatgcaggaagccc 9179054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 44573851 - 44573777
Alignment:
Q  128 ctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||||| ||||||||||||||| |  ||||| |||||||| ||||| |||| |||||||| ||||||||    
T  44573851 ctaacacaccccctcacgcttcagcccggcttaatggccctgaagcgtggacgatgcgggaagcccgacgataga 44573777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 4255946 - 4255882
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    ||||||| || |||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||    
T  4255946 aacacacaccctcacgcttcagcccgacccaat-ggcctaaagcgtggacaatgcgggaagcccaa 4255882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 14170209 - 14170281
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||| |||||||||||||||| ||| || ||||||||||||||| ||||| |||| ||||| ||||| |||||    
T  14170209 aacataccccttcacgcttcaacccaactcaatgggcctgaagcgtggacgatgcgggaagtccaacaataga 14170281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 51734646 - 51734681
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacac 134  Q
    ||||||||||||||||||||||||||||||||||||    
T  51734646 gtgggactaaatccaccgagtgttggctgctaacac 51734681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 4255719 - 4255659
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagc 191  Q
    ||||||| || |||||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  4255719 aacacacaccctcacgcttcagcccgacccaat-ggcctgaagtgtggacaatgcgggaagc 4255659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 10453974 - 10454008
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaaca 133  Q
    |||||||||||||||| ||||||||||||||||||    
T  10453974 gtgggactaaatccactgagtgttggctgctaaca 10454008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 2800050 - 2800087
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacac 136  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  2800050 gtgggactaaatccaccgagtgttagctcctaacacac 2800087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 36270559 - 36270674
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| ||||||||||| | |||||||||| || ||||||||||||||| ||||||||||||||||| ||||| ||||  |||||||||||    
T  36270559 gtgggactaaatcccaccgagtgttgaccgctaacacacaccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcttgaagcccaacg 36270658  T
Q  198 atagacctgataggct 213  Q
    || |||| ||||||||    
T  36270659 atggacccgataggct 36270674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 37756027 - 37756144
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||    
T  37756027 gtgggactaaatcccacccgagagttggccgctaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtgga-gatgcaggaagcccaac 37756125  T
Q  197 gatagacctgataggctct 215  Q
    ||| |||| ||||||||||    
T  37756126 gatggacccgataggctct 37756144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 43384143 - 43384245
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacga 198  Q
    ||||||||||||||||||||||||||||  ||||||||| |  |||||||||||||| ||||||||||||||||| | ||  |||||||||| |||||||    
T  43384143 gtgggactaaatccaccgagtgttggctattaacacaccgccccacgcttcagcccgtcccaatgggcctgaagcgtagaggatgcaggaag-ccaacga 43384241  T
Q  199 taga 202  Q
    ||||    
T  43384242 taga 43384245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 14742706 - 14742798
Alignment:
Q  102 ggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||||||  |||||| ||||| |||||| ||||||||    
T  14742706 ggactaaatccacttagtgttggctgctaacacaccccctcacgcttaagcccgacccaatggg-ttgaagcgtggacgatgcagaaagcccaa 14742798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 36495904 - 36495791
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||||| |||||||||||||  |||||||||||| | ||||||||||||||||||||||| ||||   |||||||||    
T  36495904 gtgggactaaatcccacccgagagttggccgctaacacacccc--cacgcttcagcctggcccaatgggcctgaagcatggacgatgc---aagcccaac 36495810  T
Q  197 gatagacctgataggctct 215  Q
    ||| |||| ||||||||||    
T  36495809 gatggacccgataggctct 36495791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 47346183 - 47346283
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||||| ||||||||||||| |||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||    
T  47346183 gtgggactaaatcccacccgagagttggccgctaacacaccccctcacgcttcagcccggtccaatgggcctgaagcgtgga-gatgcaggaagcccaac 47346281  T
Q  197 ga 198  Q
    ||    
T  47346282 ga 47346283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 11469863 - 11469768
Alignment:
Q  106 taaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||  |||||||||||||||||| |||| ||||||||||| ||| |||||| |||||||||||||||  || ||||||| |||||||||||    
T  11469863 taaatccacttagtgttggctgctaacactccccctcacgcttcagtccggcccaataggcctgaagcatggatgatccaggaag-ccaacgataga 11469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 40121828 - 40121900
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||| | |||||||    
T  40121828 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagccaatcgataga 40121900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 30296523 - 30296457
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    |||||||||| ||||||||||||| | || |||||||||||||| ||||| |||| |||||||||||    
T  30296523 aacacaccccctcacgcttcagcctggccaaatgggcctgaagcgtggacgatgcgggaagcccaac 30296457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 24240267 - 24240366
Alignment:
Q  99 gtgggactaaatcc-acc-gagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    |||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||  |||||||| | ||||| || |  ||||||||||||||||    
T  24240267 gtgggactaaatcccacctgagagttggctgctaacacaccccctcacgcttcagcccggtccaatgggac-gaagcgtgta-gatgcaggaagcccaac 24240364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 41670762 - 41670690
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| || ||||||||||||||| ||||||||||||||||  ||||| |||  |||||||||| ||||||    
T  41670762 aacacacaccctcacgcttcagcccggcccaatgggcctgaagtgtggacgatgtgggaagcccaatgataga 41670690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 36092481 - 36092528
Alignment:
Q  99 gtgggactaaatccaccgagtgttggctgctaacacaccccttcacgc 146  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  36092481 gtgggactaaatccactgagtgttggttgctaacacaccccctcacgc 36092528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 11470104 - 11470007
Alignment:
Q  104 actaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||| |||  ||||||||||| |||| | |||| |||| |||||| ||| |||||| |||||||| | ||||| |||||||||| |||||||||||    
T  11470104 actaaattcacttagtgttggctgttaacgctccccctcacccttcagtccggcccaataggcctgaatcgtggacgatgcaggaag-ccaacgataga 11470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 19843705 - 19843635
Alignment:
Q  115 cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgca 185  Q
    ||||||||||| |||||||||| |  ||||||||||||||| || |||||| ||||||| ||||| |||||    
T  19843705 cgagtgttggccgctaacacactcgctcacgcttcagcccggcctaatgggtctgaagcgtggacgatgca 19843635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 11469639 - 11469579
Alignment:
Q  104 actaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgg 164  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||| |||| | ||||||||    
T  11469639 actaaatccactgaatgtcggctgctaacacaccccctcacgctttagcctggcccaatgg 11469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 44314393 - 44314450
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagccc 154  Q
    ||||||||||||||   |||||||||||| |||||||||| || ||||||||||||||    
T  44314393 gtgggactaaatcccacccgagtgttggccgctaacacacaccctcacgcttcagccc 44314450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 46529016 - 46529126
Alignment:
Q  103 gactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatag 201  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| ||||| ||||   |||||||||||| |    
T  46529016 gactaaatcccaccgagtgttggctgctaacacaccccctcgcgcttcagcccggcccaatgggcctgaagcgtggacgatgc---aagcccaacgatgg 46529112  T
Q  202 acctgataggctct 215  Q
    ||| ||||||||||    
T  46529113 acccgataggctct 46529126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 52810732 - 52810831
Alignment:
Q  116 gagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||  |||||||||||||| |||| ||||||||||    
T  52810732 gagtgttggccgctaacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgtcggaagcccaacgatggacccgataggctct 52810831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 50858222 - 50858150
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  50858222 aacacacctcctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccaacgataga 50858150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 29669572 - 29669644
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  29669572 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacaataga 29669644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 45427146 - 45427218
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  45427146 aacacaccccctcatgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgataga 45427218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 990933 - 990861
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| || |||||||||||||| ||||| |||| |||||| ||||||||||    
T  990933 aacacaccccctcacgcttcagcccggcctaatgggcctgaagcgtggacgatgcgggaagctcaacgataga 990861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 37288727 - 37288845
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    ||||||| |||||| |||||||| |||  | ||||||| ||| |||| |||||||||  ||||||||||||||||  ||||||||||||||| || |||     
T  37288727 gtgggacaaaatcccaccgagtgctggtggttaacacagcccctcacccttcagcccagcccaatgggcctgaagtgtggacaatgcaggaaacctaaca 37288826  T
Q  198 atagacctgataggctcta 216  Q
    ||||||| |||| ||||||    
T  37288827 atagacccgataagctcta 37288845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 53740065 - 53740004
Alignment:
Q  141 tcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||| |||||||    
T  53740065 tcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccagcgataga 53740004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 51469690 - 51469619
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| |||||| |||||||||| ||||| |||| |||| ||||||||||||    
T  51469690 aacacaccccctcacgcttcagcccggcccaat-ggcctgaagcgtggacgatgcgggaaacccaacgataga 51469619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 21644584 - 21644550
Alignment:
Q  181 atgcaggaagcccaacgatagacctgataggctct 215  Q
    |||||||||||||||||||||||||||||| ||||    
T  21644584 atgcaggaagcccaacgatagacctgatagactct 21644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 42901808 - 42901727
Alignment:
Q  121 ttggctgctaacacaccccttcacgcttcagccc-gacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacc 204  Q
    ||||| ||||||||||||| ||||||||| |||| | ||||| || |||||||||||||| ||||   |||||||||||| ||||    
T  42901808 ttggcagctaacacaccccctcacgcttctgcccggtcccaacggacctgaagcatggacgatgc---aagcccaacgatggacc 42901727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 29228690 - 29228573
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||  ||||  ||||||||||||||||    
T  29228690 gtgggactaaatcccacccgagagttggccgctaacacaccccctcacgcttcagcccggcccaatgggcctgaagtgtgga-gatgcaggaagcccaac 29228592  T
Q  197 gatagacctgataggctct 215  Q
    ||| |||||||||||||||    
T  29228591 gatggacctgataggctct 29228573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 45858890 - 45858780
Alignment:
Q  103 gactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatag 201  Q
    |||||||||| | ||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||| | ||||| ||||   |||||||||||| |    
T  45858890 gactaaatcccctcgagtgttggccgctaacacaccctctcacgcttcagcccggcccaatgggcctgaaacgtggacgatgc---aagcccaacgatgg 45858794  T
Q  202 acctgataggctct 215  Q
    ||| ||||||||||    
T  45858793 acccgataggctct 45858780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 30604549 - 30604666
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   ||||| |||| | ||||||||||||| |||||||||||||||  |||||||||||||||  ||||  |||||||||||||||     
T  30604549 gtgggactaaatcccacccgagagttgaccgctaacacaccccctcacgcttcagcccggtccaatgggcctgaagtgtgga-gatgcaggaagcccaat 30604647  T
Q  197 gatagacctgataggctct 215  Q
    ||| |||| ||||||||||    
T  30604648 gatggaccagataggctct 30604666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 17294882 - 17294768
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    ||||||||||||||   |||||||||||| ||||||||||||| |||||||| |||||  ||||||||||||||||| ||||  ||||   |||||||||    
T  17294882 gtgggactaaatcccacccgagtgttggccgctaacacaccccctcacgctttagcccagcccaatgggcctgaagcgtgga-gatgc---aagcccaac 17294787  T
Q  197 gatagacctgataggctct 215  Q
    ||| |||| ||||||||||    
T  17294786 gatggacccgataggctct 17294768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 4187371 - 4187474
Alignment:
Q  99 gtgggactaaatcc-ac-cgagtgttggctgctaacacaccccttcacgcttcag---cccgacccaatgggcctgaagcatggacaatgcaggaagccc 193  Q
    |||||||||||||| || |||| |||||| ||||||||||||| |||| ||||||   |||| ||||||||||||||||||||||  |||||||||||||    
T  4187371 gtgggactaaatcccactcgagagttggccgctaacacaccccctcacacttcagccccccggcccaatgggcctgaagcatgga-gatgcaggaagccc 4187469  T
Q  194 aacga 198  Q
    |||||    
T  4187470 aacga 4187474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 17294993 - 17294912
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    ||||||||||||||   |||||||||||| ||||||||||||| |||||||| |||||  ||||||||||||||||| ||||    
T  17294993 gtgggactaaatcccacccgagtgttggccgctaacacaccccctcacgctttagcccagcccaatgggcctgaagcgtgga 17294912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 27957953 - 27958026
Alignment:
Q  142 cacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgataggctct 215  Q
    |||||||||||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||| ||||||||||    
T  27957953 cacgcttcagcccggcccaatgggcctgaagcgtggacgacactggaagcccaacgacagacccgataggctct 27958026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 20735732 - 20735660
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||  |||| ||||||    
T  20735732 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaaatccaatgataga 20735660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 19614223 - 19614149
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaa--tgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||| | |||||  |||||||||||| ||||| |||  ||||||||| |||||||    
T  19614223 aacacaccccctcacgcttcagcctggcccaatgtgggcctgaagcgtggacgatgtgggaagcccagcgataga 19614149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 28816905 - 28816873
Alignment:
Q  101 gggactaaatccaccgagtgttggctgctaaca 133  Q
    ||||||||||||||| |||||||||||||||||    
T  28816905 gggactaaatccacctagtgttggctgctaaca 28816873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 31411464 - 31411504
Alignment:
Q  114 ccgagtgttggctgctaacacaccccttcacgcttcagccc 154  Q
    |||||||||||  ||||||||||||| ||||||||||||||    
T  31411464 ccgagtgttggtcgctaacacaccccctcacgcttcagccc 31411504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 18541961 - 18541847
Alignment:
Q  103 gactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatag 201  Q
    |||||||||| ||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||||    
T  18541961 gactaaatcccaccaagtgttggccgctaacaccccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccgatgatag 18541862  T
Q  202 acct-gataggctct 215  Q
    | || ||||||||||    
T  18541861 atctcgataggctct 18541847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 13843907 - 13843835
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13843907 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcaggaagcccaacgataga 13843835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 22196415 - 22196531
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||| |  |||||||||||||||  ||||| |||||  ||||||||||    
T  22196415 gtgggactaaatcccaccgagtgttggccgctaaaacaccccctcacgcttcagcctggtccaatgggcctgaagtgtggacgatgcaaaaagcccaacg 22196514  T
Q  198 atagacctgataggctc 214  Q
    || ||||  ||||||||    
T  22196515 atggacccaataggctc 22196531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 27760285 - 27760213
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  27760285 aacacaccccctcacgcttcagcccggcccaatgggcctgaagcgtggacgatgcgggaagcccaacgataga 27760213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 33040485 - 33040371
Alignment:
Q  99 gtgggactaaatcc-ac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    |||||||||||||| || ||||||||||| ||||||||||| | ||||||||||||||| || |||||||||||||| ||||| ||||   |||||||||    
T  33040485 gtgggactaaatcccacgcgagtgttggccgctaacacacctcctcacgcttcagcccggccgaatgggcctgaagcgtggacgatgc---aagcccaac 33040389  T
Q  197 gatagacctgataggctc 214  Q
    ||| || | |||||||||    
T  33040388 gatggatccgataggctc 33040371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 33040300 - 33040187
Alignment:
Q  99 gtgggactaaatcc-ac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaac 196  Q
    |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||  | ||||||| |||||| ||||| ||||   |||||||||    
T  33040300 gtgggactaaatcccacgcgagtgttggccgctaacacaccccctcacgcttcagcccggacgaatgggcttgaagcgtggacgatgc---aagcccaac 33040204  T
Q  197 gatagacctgataggct 213  Q
    ||| || ||||||||||    
T  33040203 gatggatctgataggct 33040187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 1028302 - 1028374
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||| ||||| |||| |||||||||||||||||    
T  1028302 aacacaccccctcacgcttcagccctgcccaatgggtctgaagcgtggacgatgcgggaagcccaacgataga 1028374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 35758832 - 35758733
Alignment:
Q  111 ccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgatagacctgatag 210  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |  |||| ||||  |||| | |||| |||||||||||| |||||    
T  35758832 ccactgagtgttggctgctaacacacccct-cacgcttcaacccgacccaatgggtccaaagcgtggatgatgcggaaagctcaacgatagacccgatag 35758734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 83899 - 83980
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatgga 178  Q
    ||||||||||||||   |||||||||||| |||||||| |||| ||||||||||||||  ||||||||||||||||| ||||    
T  83899 gtgggactaaatcccacccgagtgttggccgctaacaccccccctcacgcttcagcccagcccaatgggcctgaagcgtgga 83980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 17584372 - 17584280
Alignment:
Q  102 ggactaaatccaccgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    |||||||||||||  ||||||||||||||||||||||| ||||  || ||||||||||||||||  |||||  ||||  |||||||||||||||    
T  17584372 ggactaaatccacttagtgttggctgctaacacaccccctcactattaagcccgacccaatggg-ttgaagtgtggatgatgcaggaagcccaa 17584280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 946905 - 946789
Alignment:
Q  99 gtgggactaaatcca--ccgagtgttggctgctaacacaccccttcacgcttcagccc-gacccaatgggcctgaagcatggacaatgcaggaagcccaa 195  Q
    ||||||||||||||   ||||| |||||| ||||||||||||| ||| |||||||||| | ||||| | ||||||||| ||||| ||||   ||||||||    
T  946905 gtgggactaaatcccacccgagagttggccgctaacacaccccctcatgcttcagcccggtcccaacgagcctgaagcgtggacgatgc---aagcccaa 946809  T
Q  196 cgatagacctgataggctct 215  Q
    |||| |||| ||||||||||    
T  946808 cgatggacccgataggctct 946789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 17016301 - 17016373
Alignment:
Q  130 aacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacgataga 202  Q
    ||||| |||| ||||||||| ||| | ||||||||  ||||||  |||||||||  |||||||||||||||||    
T  17016301 aacaccccccctcacgcttcggcctggcccaatggagctgaagtgtggacaatgtgggaagcccaacgataga 17016373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 165796 - 165712
Alignment:
Q  102 ggactaaatccac-cgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgca 185  Q
    ||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||  ||||| |||||    
T  165796 ggactaaatcccctcgagtgttggccgctaacacaccccctcacgcttcagcccggcccaatgggcctgaagtgtggacgatgca 165712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 2985 - 3099
Alignment:
Q  99 gtgggactaaatcc-accgagtgttggctgctaacacaccccttcacgcttcagcccgacccaatgggcctgaagcatggacaatgcaggaagcccaacg 197  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||| | || | ||||||| ||||||||| |||||  |||   ||||||||||    
T  2985 gtgggactaaatcccaccgagtgttggccgctaacacaccccctcacgctttaacctggcccaatgtgcctgaagcgtggacggtgc---aagcccaacg 3081  T
Q  198 atagacctgataggctct 215  Q
    || |||| ||||| ||||    
T  3082 atggacccgatagactct 3099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 18326 - 18290
Alignment:
Q  98 agtgggactaaatccaccgagtgttggctgctaacac 134  Q
    |||| ||||||||||||||||||||||||||||||||    
T  18326 agtgcgactaaatccaccgagtgttggctgctaacac 18290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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