View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_37 (Length: 532)
Name: NF0928_low_37
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 53 - 441
Target Start/End: Complemental strand, 56187809 - 56187421
Alignment:
| Q |
53 |
agtacagggattatttagttgttacatctgtgaaaaggtnnnnnnntaagaattgaagctacaaactgcatataagggaggtggtttgaactgtgatttt |
152 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56187809 |
agtacagggattatttagttattacatctgtgaaaaggtaaaaaaataagaattgaagctacaaactgcatataagggaggtggtttgaactgtgatttt |
56187710 |
T |
|
| Q |
153 |
ctttgaattcttcaaagattaataattatttatctctatctgcctttttcatgctatgttctgatttacttcttgcccttcttatgannnnnnnaggatc |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
56187709 |
ctttgaattcttcaaagattaataattatttatctctatctgcctttttcatgctatgttctgatttacttcttgcccttcttatgatttttttaggatc |
56187610 |
T |
|
| Q |
253 |
aacaacttccaacttgtagctcgaactactttcatctttgactcctctcaccctttctgactctgtctcttcaatgtctcttcctcttattgctatcnnn |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56187609 |
aacaacttccaacttgtagctcgaactactttcatctttgactcctctcaccctttctgactctgtctcttcaatgtctcttcctcttattgctatcttt |
56187510 |
T |
|
| Q |
353 |
nnnnccaagtctaatgctaaatttgcatccaatcttttatgtttgtggtgatccttttctctactttcaagaatttgagtggttcttgt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56187509 |
ttttccaagtctaatgctaaatttgcatccaatcttttatgtctgtggtgatccttttctctactttcaagaatttgagtggttcttgt |
56187421 |
T |
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