View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_40 (Length: 503)
Name: NF0928_low_40
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 81 - 412
Target Start/End: Original strand, 40211004 - 40211334
Alignment:
| Q |
81 |
ggcagtccaagtcagaataagcaataagcatacaatttcatcataagccaacaagaaaaaaccttcagctgaaagtgcaaagataagctaatgaaatcag |
180 |
Q |
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| T |
40211004 |
ggcagtccaagtcagaataagcaataagcatacaatttcatcataagccaacaagaaaaaaccttcagctgaaagtgcaaagataagctaatgaaatcag |
40211103 |
T |
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| Q |
181 |
aaattataacatttaattaaaaactacaccgaccatcaaaaaggtccttctcatcttacagaagcaaacatagaattcttattcaacataaaattggcct |
280 |
Q |
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| T |
40211104 |
aaattataacatttaattaaaaactacaccgaccatcaaaaaggtccttctcatcttacagaagcaaacatagaattcttattcaacataaaattggcct |
40211203 |
T |
|
| Q |
281 |
acaaatgtacaacacgtggttctttcttagccatatcatagcatcattgattgtgtttgtgtttgaaaattgaaattcatttgacaaattatattatgca |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
40211204 |
acaaatgtacaacacgtggttctttcttagccatatcatagcatcattgattgtgtttgtgtttgaaaattg-aattcaattgacaaattatattatgca |
40211302 |
T |
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| Q |
381 |
cgttatatatttgaaaaatgagaacaaaaaat |
412 |
Q |
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| |||||||||||||||||||||||||||||| |
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| T |
40211303 |
cattatatatttgaaaaatgagaacaaaaaat |
40211334 |
T |
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