View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_41 (Length: 491)
Name: NF0928_low_41
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Original strand, 25899353 - 25899838
Alignment:
| Q |
8 |
caatagatatcatcatgtccttaaggatcgacaaaaggattgaagcaaatcaatgtatcaggaccttgcc-attctcatttcaagtttaacctttcataa |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25899353 |
caatagatatcatcatgtccttaag-atcgacagaaggattgaagcaaatcaatgtatcaggaccttgcccattctcatttcaagtttaacctttcataa |
25899451 |
T |
|
| Q |
107 |
tcacacaatctagggaaattagtatgcnnnnnnnnnnc----ccatggcgatnnnnnnncttaaccatcacaggtcactaatc----aatatgaagagca |
198 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| || |
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|
| T |
25899452 |
tcacacaatctagggaaattagtatgcaaaaaaaaaaaaaaaccatggcgataaaaaaacttaaccatcacaggtcactaatcaatcaatatgaagatca |
25899551 |
T |
|
| Q |
199 |
ggaaataaggctatgaaataagagatagctgtgcttaccgtcaaatcgcaaccttggccataagagccacattttccgccatgagccgtcgtattttgat |
298 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25899552 |
ggaaataaggctatgcaataagagatagttgtgcttaccatcaaatcgcaaccttggccgtaagagccacattttccgccatgagccgtcgtattttgat |
25899651 |
T |
|
| Q |
299 |
tgaagtatcttatagttttcaaccgctccagagagcttcataaaaaggctccgtagtcagaaattagacttataagcagtagaagatccatattcaaaac |
398 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25899652 |
tgaagtatcttatagttttcaaccgcttcagagagcttcataagaaggctccgtagtcagaaattagacttataagcagtagaagatccatattcaaaac |
25899751 |
T |
|
| Q |
399 |
ctccaatgacattacctgccaacccttcaagcatgcattgcgccaaaatacagggttacgaattgtataccgccattttcatctcac |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25899752 |
ctccaatgacattacctgccaacccttcaagcatgcattgcgccaaagtacagggttacgaattgtataccgccattttcaactcac |
25899838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 37616721 - 37616781
Alignment:
| Q |
73 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
37616721 |
ttgccattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgc |
37616781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 162 - 478
Target Start/End: Complemental strand, 40068747 - 40068431
Alignment:
| Q |
162 |
cttaaccatcacaggtcactaatcaatatgaagagcaggaaataaggctatgaaataagagatagctgtgcttaccgtcaaatcgcaaccttggccataa |
261 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
40068747 |
cttaaccatcaccggtcaccaatcaatatgaggagcaggaaataaggttatgaaataagagatagctgtgcttaccatcaaatcgcaaccttggccgtaa |
40068648 |
T |
|
| Q |
262 |
gagccacattttccgccatgagccgtcgtattttgattgaagtatcttatagttttcaaccgctccagagagcttcataaaaaggctccgtagtcagaaa |
361 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
40068647 |
gagccacattttccgccatgagccatcgtattttgattgaagtattttatagttttcaaccgctccagagagcttcataaaaaggctccataatcagaaa |
40068548 |
T |
|
| Q |
362 |
ttagacttataagcagtagaagatccatattcaaaacctccaatgacattacctgccaacccttcaagcatgcattgcgccaaaatacagggttacgaat |
461 |
Q |
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|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
40068547 |
ttagacttataagcagtaaaagatccatattctaaacctccaatgacattacctgccaacccttcaagcatgcattgcgccaaaatgcagggttacggat |
40068448 |
T |
|
| Q |
462 |
tgtataccgccattttc |
478 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
40068447 |
tgtgtaccgccattttc |
40068431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 29200144 - 29200018
Alignment:
| Q |
6 |
accaatagatatcatcatgtccttaaggatcgacaaaaggattgaagcaaatcaatgtatcaggaccttgccattctcatttcaagtttaacctttcata |
105 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
29200144 |
accaatagataacatcatgtccttaag-atcgacagaagcattgaagaaaatcaatgtatcaggaccttgtcattctcatttcaggtttaacctttcata |
29200046 |
T |
|
| Q |
106 |
atcacacaatctagggaaattagtatgc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29200045 |
atcacacaatctagggaaattagtatgc |
29200018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 19768566 - 19768506
Alignment:
| Q |
73 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
19768566 |
ttgccattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgc |
19768506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 268 - 477
Target Start/End: Complemental strand, 41099749 - 41099536
Alignment:
| Q |
268 |
cattttccgccatgagccgtcgtattttgattgaagtatcttatagttttcaaccgctccagagagcttcataaaaaggctccgtagtcagaaat--tag |
365 |
Q |
| |
|
||||||| |||| |||| || ||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||| || | ||| || ||| |
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|
| T |
41099749 |
cattttctgccactagccatcatattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatag |
41099650 |
T |
|
| Q |
366 |
acttataagcagtagaagatccatattcaaaacctcc--aatgacattacctgccaacccttcaagcatgcattgcgccaaaatacagggttacgaattg |
463 |
Q |
| |
|
|||||||||||||| ||| || || |||||||| ||| | |||| | || ||||||||||||||||||||||| | | |||||||||| ||| ||||| |
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|
| T |
41099649 |
acttataagcagtaaaagttctattttcaaaacgtccatattgacctcacttgccaacccttcaagcatgcattccacgaaaatacaggcttatgaattt |
41099550 |
T |
|
| Q |
464 |
tataccgccatttt |
477 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
41099549 |
tataccaccatttt |
41099536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 8028212 - 8028252
Alignment:
| Q |
59 |
aatgtatcaggaccttgccattctcatttcaagtttaacct |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
8028212 |
aatgtatcaggaccttgccattctcctttcaggtttaacct |
8028252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 32663279 - 32663200
Alignment:
| Q |
50 |
aagcaaatcaatgtatcaggaccttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagt |
129 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||| |||| | |||||||| | | ||||||||||| ||||||| |||| |
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|
| T |
32663279 |
aagcaaactaatgtatcaggaacctgccattctcaattcaggcttaaccttcctttatcacacaatccagggaaaatagt |
32663200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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