View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_44 (Length: 488)
Name: NF0928_low_44
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_44 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 26452560 - 26452430
Alignment:
| Q |
358 |
aaaatttcaacagagacaatttcctttatctatttcatttgtaataattattaataagattcaagaacaatttcttaaacatgttgaaatatattgccaa |
457 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26452560 |
aaaatttcaacagagccaatttcctttatctatttcatttgtaataattattaataagattcaagaacaatttcttaaacatgttggaatatattgccaa |
26452461 |
T |
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| Q |
458 |
tgtcggtgttttcacatggttagttatatgt |
488 |
Q |
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| T |
26452460 |
tgtcggtgttttcacatggttagttatatgt |
26452430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 199 - 357
Target Start/End: Complemental strand, 26452774 - 26452620
Alignment:
| Q |
199 |
ttccaaatcacaggttgagattaaaagttggagtgtcagacatgctatttagaattatatatagatcaaaatttaggattaaacaatggaacaagactaa |
298 |
Q |
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| T |
26452774 |
ttccaaatcacaagttgagattaaaagttggagtgtcagacatgctatttagaattata----gatcaaaatttaggattaaacaatggaacaagactga |
26452679 |
T |
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| Q |
299 |
ttataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatatc |
357 |
Q |
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| T |
26452678 |
ttataacaaagacgagaaaatatgtgcttgaatgaaaggttgtatcaagaagtaatatc |
26452620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 26452822 - 26452752
Alignment:
| Q |
73 |
tgcaaagcaaggtccgcgatctatataattcaattattacttcgggaattccaaatcacaagttgagatta |
143 |
Q |
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| T |
26452822 |
tgcaaagcaaggtccgcgatctatataattcaattattacttccggaattccaaatcacaagttgagatta |
26452752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 21667886 - 21667849
Alignment:
| Q |
301 |
ataacaaagatgggaaaatacgtgcttgaaggaaaggt |
338 |
Q |
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| T |
21667886 |
ataacaaagatgggaaaatatgttcttgaaggaaaggt |
21667849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 44703393 - 44703320
Alignment:
| Q |
283 |
aatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatat |
356 |
Q |
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| T |
44703393 |
aatggaactagattgattattacaaagatgggaaaatatgtgcttgaaggaaaagttataacaggaagcaatat |
44703320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 925458 - 925532
Alignment:
| Q |
282 |
caatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatat |
356 |
Q |
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| T |
925458 |
caatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataactggaagcaatat |
925532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 776033 - 776102
Alignment:
| Q |
266 |
aaaatttaggattaaacaatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaa |
335 |
Q |
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| T |
776033 |
aaaatttaggattatgcaatggaacaagattaatcataactaggatgggaaagtttgtgcttgaaagaaa |
776102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 32813059 - 32812990
Alignment:
| Q |
266 |
aaaatttaggattaaacaatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaa |
335 |
Q |
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|||| ||||||||| ||||||||||||| |||| ||||| | ||||||||| | |||||||||||||| |
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| T |
32813059 |
aaaaattaggattatgcaatggaacaagattaatcataactaggatgggaaagtttgtgcttgaaggaaa |
32812990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 43026886 - 43026813
Alignment:
| Q |
283 |
aatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatat |
356 |
Q |
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| T |
43026886 |
aatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataacaggaagcaatat |
43026813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 5453947 - 5454020
Alignment:
| Q |
283 |
aatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatat |
356 |
Q |
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| T |
5453947 |
aatggaactagattgattattacaaagatgggaagatatgtgcttgaaggaaaagttataacaggaagcaatat |
5454020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 357
Target Start/End: Original strand, 9361660 - 9361760
Alignment:
| Q |
257 |
atatagatcaaaatttaggattaaacaatggaacaagactaattataacaaagatgggaaaatacgtgcttgaaggaaaggttgtatcaggaagtaatat |
356 |
Q |
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|||| |||| ||| ||||||||| |||||||||||| ||||| ||||| | |||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
9361660 |
atattgatctaaagttaggattatgcaatggaacaaggctaatcataactataatgggaaaatttaatcttgaaggaaaggttatatctggaagtaatat |
9361759 |
T |
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| Q |
357 |
c |
357 |
Q |
| |
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| |
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| T |
9361760 |
c |
9361760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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