View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_47 (Length: 487)
Name: NF0928_low_47
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 39895321 - 39895058
Alignment:
| Q |
15 |
gagtcaacctatcactaggcgggtttacacctgtagagtgaagaggagtacagccctgctgcgctggcagctgacagagagaatatctggtaactgtatt |
114 |
Q |
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| T |
39895321 |
gagtcaacctatcactaggcgggtttacacccgtagagtgaagaggagtacagccctgctgcgctggcagctgacagagagaatatctggtaactgtatt |
39895222 |
T |
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| Q |
115 |
ctgttggcagagttccttaagaagggggattggggtgagaattgggcatccagtgtaataatcaactgagtagaatagagagcttttagctctctgtaag |
214 |
Q |
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| T |
39895221 |
ctgttggcagagttccttaagaagggggattggggtgagaattgggcatccagtgtaataatcaactgagtagaaaagagagcttttagctctctgtaag |
39895122 |
T |
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| Q |
215 |
ggctttccctgtggctattgagaatctctcaattgtaattgtccattatcatcaataatacaaa |
278 |
Q |
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| T |
39895121 |
ggctttccctgtggctattgagaatctctcaattgtaattgtccattatcatcaataatacaaa |
39895058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 273 - 487
Target Start/End: Complemental strand, 39894791 - 39894577
Alignment:
| Q |
273 |
tacaaacataatttagcttgcattacgttatttgacattatataaatatgtaattatgcatattagtaaaactgaatgaaccgatcaaatccagaccgaa |
372 |
Q |
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| T |
39894791 |
tacaaacataatttagcttgtattacgttatttgacattatataaatatgtaattatgcatattagtaaaactgaatgaaccgatcaaatccagaccgaa |
39894692 |
T |
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| Q |
373 |
cttaattgaattggatcatactagattcttttgaggaaacaatctaaacagaaccacatactacttaaaactttggatcaaatggcttttcacctcaatt |
472 |
Q |
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| T |
39894691 |
cttaattgaattggatcatattagattcttttgaggaaacaatctaaacagaaccacatactacttaaaactttggatcaaatggcttttcacctcaatt |
39894592 |
T |
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| Q |
473 |
ggactgcaaacaccc |
487 |
Q |
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| T |
39894591 |
ggactgcgaacaccc |
39894577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 38240165 - 38240263
Alignment:
| Q |
153 |
gaattgggcatccagtgtaataatcaactgagtagaatagagagcttttagctctctgtaagggctttccctgtggctattgagaatctctcaattgtaa |
252 |
Q |
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| T |
38240165 |
gaattgggtattcagtgtaataatca--tgagtagaatggagaacatttagctctctgtaggggcttgccctgtggtacttgggaatatctcaattgtaa |
38240262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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