View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_49 (Length: 477)
Name: NF0928_low_49
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 16910985 - 16910651
Alignment:
| Q |
10 |
gcagagacttggtgaacgagaccacgtgttagagatatagaattaaggtttggagtagaaagcacaactttgtaacgttccggagcggtaaaacctatgg |
109 |
Q |
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| T |
16910985 |
gcagagaattgatgaacgagaccacgaaagagagagatagaattaaggtttggagtagaaagcacaactttgtaacgttccggaggggtacaacctatgc |
16910886 |
T |
|
| Q |
110 |
acaaactatatagcttggaattagatatgcagaggacagttgcattgtgttgtagacaccaacagtcaagaaccaaggtgcttaacatcttaaaatttga |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| |
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| T |
16910885 |
acaaactagatagcttggaattagatatgcagaggacagttgcattgtgttgtagagaccaacagttaaggaccaaagtgcttaacatcttaaaatttga |
16910786 |
T |
|
| Q |
210 |
aaagggttccacaatgccattatcatttgcaacaaaagtgacagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatc |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16910785 |
aaagggttccacaatgccattgtcatttgcaacaaaagtggcagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatc |
16910686 |
T |
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| Q |
310 |
atccaacggacaccccaaaataaaagctttagatg |
344 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
16910685 |
atccaagggacaccccaaaataaaagctttagatg |
16910651 |
T |
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