View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_5 (Length: 999)
Name: NF0928_low_5
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 571 - 819
Target Start/End: Original strand, 32266852 - 32267100
Alignment:
| Q |
571 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
670 |
Q |
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| T |
32266852 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
32266951 |
T |
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| Q |
671 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttnnnnnnnnnnnnnnnnnntgatgattataatgatgatgatgagaatgcac |
770 |
Q |
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| T |
32266952 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagcatgatgattataatgatgatgatgagaatgcac |
32267051 |
T |
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| Q |
771 |
aaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
819 |
Q |
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| T |
32267052 |
aaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
32267100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 318 - 544
Target Start/End: Original strand, 32266594 - 32266822
Alignment:
| Q |
318 |
atcagaagattcagaaacaaaacgacccttatgaccnnnnnnnt--ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttcca |
415 |
Q |
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| T |
32266594 |
atcagaagattcagaaacaaaacgacccttatgaccaaaaaaaatactctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttcca |
32266693 |
T |
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| Q |
416 |
tctcagaaacagatgaagaaccgccattaacagaagaagaagaaggttgatgatttgaaagagtaatagacttgaacctaattcttctcttagatttcct |
515 |
Q |
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| T |
32266694 |
tctcagaaacagatgaagaaccaccattaacagaagaagaagaaggttgctgatttgaaagagtaatagacttgaacctaattcttctcttagatttcct |
32266793 |
T |
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| Q |
516 |
tagattcattgttgtagcagcaacacaaa |
544 |
Q |
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| T |
32266794 |
tagattcattgttgtagcagcaacacaaa |
32266822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 32266899 - 32267114
Alignment:
| Q |
1 |
ctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtg |
100 |
Q |
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| T |
32266899 |
ctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtg |
32266998 |
T |
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| Q |
101 |
gttnnnnnnnnnnnnnnnnnntgatgattataatgatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggt |
200 |
Q |
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| T |
32266999 |
gttgcagcagcagtagcagcatgatgattataatgatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggt |
32267098 |
T |
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| Q |
201 |
ttccaccatcaccaac |
216 |
Q |
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| T |
32267099 |
ttccaccatcaccaac |
32267114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 892 - 989
Target Start/End: Original strand, 32267170 - 32267267
Alignment:
| Q |
892 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg |
989 |
Q |
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| T |
32267170 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg |
32267267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 613 - 692
Target Start/End: Original strand, 19301397 - 19301476
Alignment:
| Q |
613 |
tctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
692 |
Q |
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| T |
19301397 |
tctttctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19301402 - 19301476
Alignment:
| Q |
1 |
ctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
75 |
Q |
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| T |
19301402 |
ctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 19301508 - 19301573
Alignment:
| Q |
149 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtttccaccatcacca |
214 |
Q |
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| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggttaccatcatcacca |
19301573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 766 - 818
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
| Q |
766 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt |
818 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt |
19301560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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