View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_50 (Length: 472)
Name: NF0928_low_50
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 45580415 - 45580896
Alignment:
| Q |
1 |
atacacacataattaactatcgttaaacaggtaaaagaaaaaacttgaataaattcatgatattcaaagtataaattgaaatctacacagaaggaaacaa |
100 |
Q |
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| T |
45580415 |
atacacacataattaactatcgttaaacaggtaaaagaaaaaacttgaataaattcatgatattcaaagtataaattgaaatctacacagaaggaaacaa |
45580514 |
T |
|
| Q |
101 |
taagtacctgcacttggagagattctggagaaaagcttattgtgctgtaatttacgactgcttgcttgcgatgaaaaatattaggatttcttctta---- |
196 |
Q |
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| T |
45580515 |
taagtacctgcacttggagagattctggagaaaagcttattgtgctgtaatttacgactgcttgcttgcgatgaaaaatattaggatttcttcttaagct |
45580614 |
T |
|
| Q |
197 |
-----------------tagtcgtcaggattattgtcatattatttttgtttgtatgggctcgtgcgtttgcttttcaccacgcaatttgctatttagac |
279 |
Q |
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| T |
45580615 |
ttagatttatttatttatagtcgtcaggattattgtcatattatttttgtttgtatgggctcgtgcgtttgcttttcaccacgcaatttgctatttagac |
45580714 |
T |
|
| Q |
280 |
ccctatattggaaattacattctcatgctatgaaaagttatcttccacttgttacctatcagtagatacattcccatatgtcccataatacctcatgtgt |
379 |
Q |
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| T |
45580715 |
ccctatattggaaattacattctcatgctatgagaagttatcttccactcgttacctatcagtagatacattcccatatgtcccataatacctcatgtgt |
45580814 |
T |
|
| Q |
380 |
tattattgatttgaaccttcataaacttgaactatatgaagagnnnnnnnnncactattcttcctttaatagttgatcttcatct |
464 |
Q |
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| T |
45580815 |
tattattgatttgaaccttcataaacttgaactatatgaaga---aaaaaaacactattcttcctttaatagttgatcttcatct |
45580896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36745542 - 36745585
Alignment:
| Q |
1 |
atacacacataattaactatcgttaaacaggtaaaagaaaaaac |
44 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
36745542 |
atacacagataattaactatcgttaaacaggtaaaacaaaaaac |
36745585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 36745682 - 36745716
Alignment:
| Q |
77 |
tgaaatctacacagaaggaaacaataagtacctgc |
111 |
Q |
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| T |
36745682 |
tgaaatctacacagaaggaaacaataagtacctgc |
36745716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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