View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_54 (Length: 464)
Name: NF0928_low_54
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_54 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Complemental strand, 38250043 - 38249589
Alignment:
| Q |
10 |
aagaatataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaat |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
38250043 |
aagaaaataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagataagatactagagttctcaacaataatctacgaat |
38249944 |
T |
|
| Q |
110 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249943 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
38249844 |
T |
|
| Q |
210 |
attagtccgacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcgttca |
309 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249843 |
attagtccgacacaaacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcgttca |
38249744 |
T |
|
| Q |
310 |
cagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249743 |
cagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttca |
38249644 |
T |
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| Q |
410 |
atcccaatgctcgtactctcactttcgatactttttgccatgaacctgactcata |
464 |
Q |
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| T |
38249643 |
atcccaatgctcttactctcactttcaatactttttgccatgaacctgactcata |
38249589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 464
Target Start/End: Complemental strand, 38255139 - 38254706
Alignment:
| Q |
23 |
taataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaattaaacacggcagc |
122 |
Q |
| |
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|||||||||||| | ||||||||||||||| |||||||| || |||||||| |||| ||||||||| |||||||||| |||||| | |||||| |
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| T |
38255139 |
taataaatccaaaattaaaaactacttatgcattaaatttaatgaaataagat-----actacagttctcaataataatctaccgattaaagatggcagc |
38255045 |
T |
|
| Q |
123 |
atatgtaatagcag----aattaatg-tttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagcattagtcc |
217 |
Q |
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|||| |||| ||| || ||||| |||||||| ||||||||| | |||||||| ||||| ||| | |||||||| || | ||||||||| |
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| T |
38255044 |
atatttaattgcaatagtaagtaatggtttggactccatccaatttt----gcagcaacataagtttctaac----aaggcatagctctaacattagtcc |
38254953 |
T |
|
| Q |
218 |
gacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccacaactatgttggcaaatttcctccaccatcatatatcgttcacagtccaa |
317 |
Q |
| |
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||| |||||| ||||| |||||||||||||| ||||||| ||| || || | ||| || ||||| || | ||||||||| | ||||| ||||| |
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| T |
38254952 |
cacatgaacgaagtgtatcagagtaggagataaaacgagggttaaatgcataattgtgtccacatatttcttcgagcatcatataactttcaccctccaa |
38254853 |
T |
|
| Q |
318 |
accgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatcccaat |
417 |
Q |
| |
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||| |||| |||| || | ||| || ||||| | ||| ||| ||| ||||||||||||||| ||||||||| |||| | |||| |||||||||||| |
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| T |
38254852 |
accataactataaagtttctgttccgttgcaaagactaagagactaccattcataaccataaactttctaacattgggatttgtctcattcaatcccaat |
38254753 |
T |
|
| Q |
418 |
gctcgtactctcactttcgatactttttgccatgaacctgactcata |
464 |
Q |
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|||| ||| ||||||||| |||| |||| ||| |||||||||||||| |
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| T |
38254752 |
gctcttaccctcactttcaatacctttttccacgaacctgactcata |
38254706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 283 - 462
Target Start/End: Original strand, 20655704 - 20655883
Alignment:
| Q |
283 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
382 |
Q |
| |
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||||| || ||||||||||| | ||||| |||||||| ||| ||||| || |||| |||| ||||| ||| |||| ||| |||||||||||||||| |
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| T |
20655704 |
atttcttcgaccatcatataactttcaccctccaaaccataaccgtaaagtttctctttcgtaggaaaaactaatagattaccattcataaccataaacc |
20655803 |
T |
|
| Q |
383 |
ctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactca |
462 |
Q |
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||||||||||||||| | |||| |||||||||||||||| |||||||||||| |||| |||| ||| ||||||||||| |
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| T |
20655804 |
ctctaacattaggatttgtctcattcaatcccaatgctcttactctcacttttaatacctttttccacaaacctgactca |
20655883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 344 - 464
Target Start/End: Complemental strand, 20657354 - 20657234
Alignment:
| Q |
344 |
tagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatacttt |
443 |
Q |
| |
|
||||||||| ||| |||| ||| ||||||| ||||||||||||||||||||||| | |||| ||||||| |||||||| ||| |||||| || |||| || |
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| T |
20657354 |
tagcaaaaactaagagattaccattcataaacataaaccctctaacattaggatttgtctcattcaatctcaatgctcttaccctcactgtcaatacctt |
20657255 |
T |
|
| Q |
444 |
ttgccatgaacctgactcata |
464 |
Q |
| |
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|| ||| |||||||||||||| |
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| T |
20657254 |
tttccacgaacctgactcata |
20657234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 460
Target Start/End: Original strand, 12035623 - 12035815
Alignment:
| Q |
274 |
tgttggcaaatttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataa |
373 |
Q |
| |
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||||| || ||||| || ||||||||||| | ||||| |||||||| | ||||||| || ||||| |||||||||| || |||| || ||||||| |
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| T |
12035623 |
tgttgacacatttcttcgaccatcatataactttcaccctccaaaccatagctgtaaagtttctcttccgtagcaaaaacgaagagattacgattcataa |
12035722 |
T |
|
| Q |
374 |
ccataaaccctc------taacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgact |
460 |
Q |
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|||||||||||| |||||||||||| | |||| |||||||||||||||| ||| |||||||| |||| |||| ||| |||||||||| |
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| T |
12035723 |
ccataaaccctctaacattaacattaggatttgtctcattcaatcccaatgctcttaccctcacttttaatacctttttccacgaacctgact |
12035815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 397
Target Start/End: Complemental strand, 12037251 - 12037137
Alignment:
| Q |
283 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
382 |
Q |
| |
|
||||| || ||||||||||| | ||||| | |||||| ||||||||| || |||| ||||||||| ||| |||| ||| |||||||||||||||| |
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| T |
12037251 |
atttcttcgaccatcatataactttcacccttcaaaccataactgtaaagtttctctttcatagcaaaaactaatagattaccattcataaccataaacc |
12037152 |
T |
|
| Q |
383 |
ctctaacattaggat |
397 |
Q |
| |
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||||||||| ||||| |
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| T |
12037151 |
ctctaacatgaggat |
12037137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 464
Target Start/End: Complemental strand, 12036980 - 12036917
Alignment:
| Q |
401 |
tctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactcata |
464 |
Q |
| |
|
|||| |||||||||||||||| || ||||||||| |||| |||| ||| |||||||||||||| |
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|
| T |
12036980 |
tctcattcaatcccaatgctcttaacctcactttcaatacctttttccacgaacctgactcata |
12036917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 461
Target Start/End: Complemental strand, 22177834 - 22177656
Alignment:
| Q |
283 |
atttcctccaccatcatatatcgttcacagtccaaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaacc |
382 |
Q |
| |
|
||||| || ||||||||||| | ||||| |||||||| |||| |||| || ||||| |||||||| | ||| |||| ||| |||||||| ||||||| |
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| T |
22177834 |
atttcttcgaccatcatataactttcaccctccaaaccataactataaagtttctcttccgtagcaaagactaagagattaccattcataacaataaacc |
22177735 |
T |
|
| Q |
383 |
ctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactttttgccatgaacctgactc |
461 |
Q |
| |
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|||||||||| |||| | |||| ||||||| |||||||| ||| ||||||||| |||| |||| || ||||||||||| |
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|
| T |
22177734 |
ctctaacattgggatttgtctcattcaatctcaatgctcttaccctcactttcaatacctttttgcacgaacctgactc |
22177656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 461
Target Start/End: Complemental strand, 22169499 - 22169381
Alignment:
| Q |
343 |
gtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatcccaatgctcgtactctcactttcgatactt |
442 |
Q |
| |
|
|||||||| | ||| |||| ||| |||||||||||||||||||||||||| |||| | |||| |||||| |||||||| ||| ||||||||| |||| | |
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| T |
22169499 |
gtagcaaagactaagagattaccattcataaccataaaccctctaacattgggatttgtctcattcaatttcaatgctcttaccctcactttcaatacct |
22169400 |
T |
|
| Q |
443 |
tttgccatgaacctgactc |
461 |
Q |
| |
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||| ||| ||||||||||| |
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| T |
22169399 |
ttttccacgaacctgactc |
22169381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 22178084 - 22177947
Alignment:
| Q |
21 |
tataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaattaaacacggca |
120 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| |||||||| ||| | || |||||||| ||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
22178084 |
tataataaatccaaaattaaaaactatttatgcattaaattt-----aatgaaataagatactacagttctcaataataatctacgaattaaacatggca |
22177990 |
T |
|
| Q |
121 |
gcatatgtaatagcagaattaat-gtttggacttcatccaatt |
162 |
Q |
| |
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||||||| ||| ||| || |||| ||||||||| ||||||||| |
|
|
| T |
22177989 |
gcatatgaaattgcaaaagtaatggtttggactccatccaatt |
22177947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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