View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_56 (Length: 454)
Name: NF0928_low_56
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 35 - 440
Target Start/End: Original strand, 32648751 - 32649157
Alignment:
| Q |
35 |
acatcaaataatatactaaatggtggaacaccttcccaaatccttatgcggaaactttagtgtaccaaacaattttagtttcttagaatcacatgaaaat |
134 |
Q |
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| T |
32648751 |
acatcaaataatacactaaatggtggaacacctttccaaatccttatgcggaaactttaatgtaccaaacaattttagtttcttagaatcacatgaaaat |
32648850 |
T |
|
| Q |
135 |
gacnnnnnnnncccaacaatagttgattaccgtcagttttctgttttgaagccaacagtagttgccaccgaagtttt-ttggtcattttcatgtttctaa |
233 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
32648851 |
gacaaaaaaaacccaacaatagttgattaccgtcaattttctgttttgaagccaacagtagttgccactgaagtttttttggtcattttcatgtttctaa |
32648950 |
T |
|
| Q |
234 |
actattgattaaaaaacaacaacattccattttgataccggtaagatttttgattttagggtcttcaatatatttttcttattgattatcaaaccccacc |
333 |
Q |
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| T |
32648951 |
actattgattaaaaaacaacaacattccattttgagaccggtaagattttttattttagggttttcaatatatttttcttattgattatcaaaccccacc |
32649050 |
T |
|
| Q |
334 |
aacacattacctctttgaccatctcgttgagtaccatgccaattaccccttgagcagaagtgatagttgtttctctgccaataaatgttagtgccatcat |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32649051 |
aacacattacctctttgaccatctcgttgagtaccatgccaattaccccttgagcagaagtgatagttgtttctctgccaataaatgttagtgccatcac |
32649150 |
T |
|
| Q |
434 |
cccatcc |
440 |
Q |
| |
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||||||| |
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| T |
32649151 |
cccatcc |
32649157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 32545747 - 32545645
Alignment:
| Q |
338 |
cattacctctttgaccatctcgttgagtaccatgccaattaccccttgagcagaagtgatagttgtttctctgccaataaatgttagtgccatcatccca |
437 |
Q |
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||||||||||| ||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
32545747 |
cattacctcttggaccatctcattgagtaccataacaattgccccttgagaagaagtgatagttgtttctctgccaacaaatgttaatgccatcatccca |
32545648 |
T |
|
| Q |
438 |
tcc |
440 |
Q |
| |
|
||| |
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|
| T |
32545647 |
tcc |
32545645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 439
Target Start/End: Complemental strand, 27878347 - 27878242
Alignment:
| Q |
340 |
ttacctctttgaccatctcgttgagtaccatgccaattaccccttgagcagaagtga------tagttgtttctctgccaataaatgttagtgccatcat |
433 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| |||| ||||| |||||| | | | ||||||||||||||| ||||||||| ||||||| |
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| T |
27878347 |
ttacctcttggaccatctcgttgagtaccaggccaagtacctcttgaatagaagtaatttcatttgatgtttctctgccaatgaatgttagtaccatcat |
27878248 |
T |
|
| Q |
434 |
cccatc |
439 |
Q |
| |
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||||| |
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|
| T |
27878247 |
accatc |
27878242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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