View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_64 (Length: 431)
Name: NF0928_low_64
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 56469359 - 56469751
Alignment:
| Q |
11 |
cagagacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacc |
110 |
Q |
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| T |
56469359 |
cagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacc |
56469458 |
T |
|
| Q |
111 |
tttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagtatgacacac |
210 |
Q |
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| T |
56469459 |
tttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagaatgacacac |
56469558 |
T |
|
| Q |
211 |
aaagagacagtcattctcattgtgccaccaaggaaggatgcagctcccaaaagtgcaaacaaacccacatccaaaactgtaaatggacttaacagacttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56469559 |
aaagagacagtcattctcattgtgccaccaaggaaggatgcagcacccaaaagtgcaaacaaacccacatccaaaactgtaaatggacttaacagacttc |
56469658 |
T |
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| Q |
311 |
cagcaacacgcccatatgaagcccctgctagtatcactggaataaacaaccctgagggaattgcgatgccataagtaatgattccaaggaagt |
403 |
Q |
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| T |
56469659 |
cagcaacacgcccatatgaagcccctgctagtatcactggaataaacaaccctgagggaattgcgatgccataagtaatgattccaaggaagt |
56469751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 155195 - 154930
Alignment:
| Q |
11 |
cagagacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacc |
110 |
Q |
| |
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|||| |||||||| || |||||||||| ||||||||| || |||||||| |||||| |||||| | ||||||| |||| || |||||||||||||| |
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| T |
155195 |
cagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctgatcataaacacc |
155096 |
T |
|
| Q |
111 |
tttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagtatgacacac |
210 |
Q |
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||||||||||||||| ||||| | ||| || ||||||||||| |||||||||||||||||||| | | ||| ||||| ||||| |||||||||||||| |
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| T |
155095 |
tttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaagtatgacacat |
154996 |
T |
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| Q |
211 |
aaagagacagtcattctcattgtgccaccaaggaaggatgcagctcccaaaagtgcaaacaaaccc |
276 |
Q |
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| T |
154995 |
agagaaactgtcattctcatcgtgccaccaaggaaagatgcggctccaaggagagcaaacaaaccc |
154930 |
T |
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