View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_65 (Length: 430)
Name: NF0928_low_65
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_65 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Complemental strand, 48100330 - 48099940
Alignment:
| Q |
30 |
cttggaatcagcatcagctgggacaatgaccccaattactaagaatataccaaaagatatcatcaaaggaacaaaagatgaaggaattgccatttgcctt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48100330 |
cttggaatcagcatcagctgggacaatgaccccaattactaagaatataccaaaagatatcatcaaaggaacaaaagatgaaggatttgccatttgcctt |
48100231 |
T |
|
| Q |
130 |
gagttagttgaaaagaattaacctttttcaatatgtgtattggatacatcaattc-atgcctttttatagccacnnnnnnnnaaacaataaaagagtgaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48100230 |
gagttagttgaaaagaattaacctttttcaatatgtgtattggatacatcaatttgatgcctttttatagccacttttttt-aaacaataaaagagtgaa |
48100132 |
T |
|
| Q |
229 |
ttttaggtagaatgaactttttggtggtatttaattgaaatgaattgtttcaagttgcatgttttctagttttgaaagtgcatgacatgtgaaattggtt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100131 |
ttttaggtagaatgaactttttggtggtatttaattgaaatgaattgtttcaagttgcatgttttctagttttgaaagtgcatgacatgtgaaattggtt |
48100032 |
T |
|
| Q |
329 |
gaatggaaatgcaataagaaataatttccgccgcccaaaagcatacaaaaaatgtaagaaggaaaaagtgaaaacaaggtatgtttcctatg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48100031 |
gaatggaaatgcaataagaaataatttccgccgcccaaaagcatacaaaaaatgtaagaaggaaaaagtgaaaacaaggtatgtttcctatg |
48099940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 109 times since January 2019
Visitors: 6713