View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_66 (Length: 430)
Name: NF0928_low_66
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_66 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 34578794 - 34578375
Alignment:
| Q |
11 |
cagagatccataacccaagaaaggtatgttatgcttacctcaacaaatgtatttgatgggcttttaattgtagaatgttatacataatatatattccaca |
110 |
Q |
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| T |
34578794 |
cagagatccataacccaagaaaggtatgttatgcttacctcaacaaatgtatttgatgggcttttaattgtagaatgttatacataatatatattccaca |
34578695 |
T |
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| Q |
111 |
acaggaacagcatcaaatcaaatgagacaaaatttggaagcaaaatggtaagcagttcactcccaggttctagcaaagtaacgaaggatgcaccagcgtt |
210 |
Q |
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| T |
34578694 |
acaggaacaacatcaaatcaaatgagacaaaatttggaagcaaaatggtaagcagttcactcccaggttctagcaaagtaacgaaggatgcaccagcgtt |
34578595 |
T |
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| Q |
211 |
gcttggcagaaaagatgatcttaaaagttgtaataccaggtaatatatatgctcatggatttctgttatacgagaagtttcttattttataaagactatt |
310 |
Q |
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| T |
34578594 |
gcttggcagaaaagatgatcttaaaagttgtaataccaggtaatatatatgcttatggatttctgttatacgagaagtttcttattttataaagactatt |
34578495 |
T |
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| Q |
311 |
tttgcaactgcaaagatgctatctttgtggaagttaggttgttacttcccaagtaatgaatgtgactgttacttccgaattccgatcatgaccagggagg |
410 |
Q |
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| T |
34578494 |
tttgcaactgcaaagatgctatctttgtggaagttaggttgttacttcccaagtaatgaatgtgactgttacttccgaattccgatcatgaccagggagg |
34578395 |
T |
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| Q |
411 |
gcattgttttagatgttaca |
430 |
Q |
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| T |
34578394 |
gaattgttttagatgttaca |
34578375 |
T |
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