View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_67 (Length: 429)
Name: NF0928_low_67
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_67 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 97 - 429
Target Start/End: Complemental strand, 7622835 - 7622503
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622835 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7622736 |
T |
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| Q |
197 |
tagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622735 |
tagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattt |
7622636 |
T |
|
| Q |
297 |
taaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622635 |
taaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
7622536 |
T |
|
| Q |
397 |
cttcttcactcttttgattggaatctgcctcat |
429 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
7622535 |
cttcttcaatcttttgattggaatctgcctcat |
7622503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 97 - 429
Target Start/End: Complemental strand, 7627386 - 7627054
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627386 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7627287 |
T |
|
| Q |
197 |
tagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627286 |
tagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattt |
7627187 |
T |
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| Q |
297 |
taaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627186 |
taaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
7627087 |
T |
|
| Q |
397 |
cttcttcactcttttgattggaatctgcctcat |
429 |
Q |
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||||||||||||||||| ||||| ||||||||| |
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| T |
7627086 |
cttcttcactcttttgactggaagctgcctcat |
7627054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 97 - 429
Target Start/End: Complemental strand, 7634522 - 7634190
Alignment:
| Q |
97 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
196 |
Q |
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||||||||| | |||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7634522 |
aaagagacaatgagattatttccaccatcaccattactagtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaactt |
7634423 |
T |
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| Q |
197 |
tagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattt |
296 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
7634422 |
tagtgtatgttaatgcatgggccataggaagggatcctgagaattggaaagaccctgaagagttttatcctgaaaggttcattatgagttcagtggactt |
7634323 |
T |
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| Q |
297 |
taaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
396 |
Q |
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||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7634322 |
taaagggaaaaattttgagctaattccatttggaagtggaagaagaatgtgtcctgcaatgaacatgggagtggtcactgttgagcttacacttgctaat |
7634223 |
T |
|
| Q |
397 |
cttcttcactcttttgattggaatctgcctcat |
429 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
7634222 |
cttcttcactcttttgattggaagttgcctcat |
7634190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 22941495 - 22941586
Alignment:
| Q |
259 |
ttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
350 |
Q |
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||||||||||||||||| ||| ||||| || |||| ||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
22941495 |
ttttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaagaatgtgtcc |
22941586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 352
Target Start/End: Complemental strand, 22986410 - 22986263
Alignment:
| Q |
205 |
gttaatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaaggga |
304 |
Q |
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|||||||| |||||||| | | |||||||| | ||||||||||||| || ||||||||||||| ||||| ||| ||||| | ||||| ||||| | |
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| T |
22986410 |
gttaatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaa |
22986311 |
T |
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| Q |
305 |
agaattttgagttgattccatttggaagtggaagaagaatgtgtcctg |
352 |
Q |
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|||||||||| ||||||||||| |||||| ||||| ||||||| |
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| T |
22986310 |
ctaattttgagtacattccatttggtgctggaaggagaatttgtcctg |
22986263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 22916834 - 22916886
Alignment:
| Q |
298 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
350 |
Q |
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||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
22916834 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22916886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 22932253 - 22932201
Alignment:
| Q |
298 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
350 |
Q |
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||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
22932253 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22932201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 23610347 - 23610280
Alignment:
| Q |
208 |
aatgcatgggccatagcaagggatcctgagaattggaatgaccctgaagagttttatcctgaaaggtt |
275 |
Q |
| |
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||||| ||||| |||| |||||||||| | ||||||||||||| || ||||||||||||||||||| |
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| T |
23610347 |
aatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtt |
23610280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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