View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_72 (Length: 418)

Name: NF0928_low_72
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_72
NF0928_low_72
[»] chr2 (1 HSPs)
chr2 (31-409)||(12669968-12670346)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 31 - 409
Target Start/End: Original strand, 12669968 - 12670346
Alignment:
Q  31 catggtggtcatgaacttgctcctactagtactcatcacatgcatgagattttccttattgggacctgtatcatatgaatcatactcttaattagtgatt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12669968 catggtggtcatgaacttgctcctactagtactcatcacatgcatgagattttccttattgggacctgtatcatatgaatcatactcttaattagtgatt 12670067  T
Q  131 gcagagaatgaagaaagaatggcaggagcagtactagccagctttagatttataaatagaaattttatgtatattattataatataaagtaaagtttttc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12670068 gcagagaatgaagaaagaatggcaggagcagtactagccagctttagatttataaatagaaattttatgtatattattataatataaagtaaggtttttc 12670167  T
Q  231 agatgatcaaagtaaaatatagaaaaagctagtatataaagatatgcctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670168 agatgatcaaagtaaaatatagaaaaagctagtatataaagatatgcctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatg 12670267  T
Q  331 aaagtaaaatgattatggagatttccacattgaacaagtctagtagtacctttgacaaatttgtcttttggtttcatct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670268 aaagtaaaatgattatggagatttccacattgaacaagtctagtagtacctttgacaaatttgtcttttggtttcatct 12670346  T

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