View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_75 (Length: 403)
Name: NF0928_low_75
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_75 |
 | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 42200160 - 42199816
Alignment:
| Q |
30 |
atatataggttcaatcagcacaaattgccataagttaaatactaaattgttatagtacagcaatgcagcaacactagaaccttgatcttgattagaaact |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42200160 |
atatataggttcaatcagaacaaattgccataagttaaatactaaattgttatagtacagcaatgcagcagcactagaaccttgatcttgattagaaact |
42200061 |
T |
|
| Q |
130 |
aagatacatactcctacaaacactagatagcaataatttacaaactcccaatacctgcaattagaatttagaacaactccacaggagacaatttttcaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42200060 |
aagatacatactcctacaaacactagatagcaataatttacaaactcccaataccttcaattagaatttagaacaactccacaggagacaatttttcaag |
42199961 |
T |
|
| Q |
230 |
ttaatccattaacacaatccctagatacaccatactatatatcacaaactatgtgtgaatctgtcacatagtatccagattgcaaaatcctgatcaaacc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42199960 |
ttaatccattaacacaatccctagatacaccatactatatatcacaaactatgtgtgaatctgtca---------cagattgcaaaatcctgatcaaacc |
42199870 |
T |
|
| Q |
330 |
aaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcatacaa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42199869 |
aaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcatacaa |
42199816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 49361438 - 49361523
Alignment:
| Q |
98 |
caacactagaaccttgatcttgattagaaactaagatacatactcctacaaacactagatagcaataatttacaaactcccaatac |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49361438 |
caacactagaaccttgatcttgactagaaactaagatacatactacaacaaacactagatagcaataatttacaaactccctatac |
49361523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 19029885 - 19029964
Alignment:
| Q |
105 |
agaaccttgatcttgattagaaactaagatacatactcctac-aaacactagatagcaataatttacaaactcccaatac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19029885 |
agaaccttgatcttgattagaaactaagatacatactccaacaaaacactagataacaataatttacaaactcccaatac |
19029964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 19030022 - 19030128
Alignment:
| Q |
167 |
ttacaaactcccaatacctgcaattagaatttagaacaactccacaggagacaatttttcaagttaatccattaacacaatcc-ctagatacaccatact |
265 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
19030022 |
ttacaaactcccaatgcctgcaattacaagttagaataactccacataagacaatttttcatgttaatccattaaaacaatccactagatacagcataca |
19030121 |
T |
|
| Q |
266 |
atatatc |
272 |
Q |
| |
|
||||||| |
|
|
| T |
19030122 |
atatatc |
19030128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 49349596 - 49349683
Alignment:
| Q |
190 |
ttagaatttagaacaactccacaggagacaatttttcaagttaatccattaacacaatcc-ctag----atacaccatactatatatc |
272 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
49349596 |
ttagaatttagaataactccacatgagacaatttttcaagttaatccattaacacaatccgctagatatatacaccatactatatatc |
49349683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 19030187 - 19030276
Alignment:
| Q |
270 |
atcacaaactatgtgtgaatctgt--cacatagtatccagattgcaaaatcctgatcaaaccaaaccaaattgctgacatccacggtttagaaac |
362 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
19030187 |
atcacaaactatgtgtgaatctgtcacacagagtatccagattgcagaatcctgat-----taaaccaaattgctcacatccacagtttagaaac |
19030276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 249850 - 249937
Alignment:
| Q |
190 |
ttagaatttagaacaactccacaggagacaatttttcaagttaatccattaacacaatcc-ctag----atacaccatactatatatc |
272 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
249850 |
ttagaatttagaataactccacatgagacaatttttcaagttaatcaactaacacaatccgctagatatatacaccatactatatatc |
249937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 250014 - 250072
Alignment:
| Q |
270 |
atcacaaactatgtgtgaatctgtcacata---gtatccagattgcaaaatcctgatca |
325 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
250014 |
atcacaaactatgtgtgaatctgtcacacagatgtatccagattgcataatcctgatca |
250072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 824 times since January 2019
Visitors: 6719