View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_79 (Length: 399)
Name: NF0928_low_79
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 39470792 - 39470579
Alignment:
| Q |
102 |
ctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470792 |
ctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaa |
39470693 |
T |
|
| Q |
202 |
acaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcacaaacatgattgatgttgccaaagaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470692 |
acaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcacaaacatgattgatgttgccaaagaa |
39470593 |
T |
|
| Q |
302 |
ttttccctccctgc |
315 |
Q |
| |
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|||||||||||||| |
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|
| T |
39470592 |
ttttccctccctgc |
39470579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 102 - 315
Target Start/End: Original strand, 39486599 - 39486818
Alignment:
| Q |
102 |
ctctccatgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaa |
201 |
Q |
| |
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||||||| |||||||||||||||||| |||| ||| ||||| | | | ||| ||| | |||||||||||||| |||||||| ||| |||||||||| |
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| T |
39486599 |
ctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacgctctccttgaagctcagaaaccaaacgtcaa |
39486698 |
T |
|
| Q |
202 |
acaagctatctccaacctcactact------ggagaacaacatggacccctcgccgctgtcattgttgacatgttctgcacaaacatgattgatgttgcc |
295 |
Q |
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| T |
39486699 |
acaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgacatgttctgcaccaccatgattgatattgcc |
39486798 |
T |
|
| Q |
296 |
aaagaattttccctccctgc |
315 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
39486799 |
aaagaattttccatccctgc |
39486818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 39475711 - 39475841
Alignment:
| Q |
170 |
gctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggaga---acaacatggacccctcgccgctgtcattgttgaca |
266 |
Q |
| |
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||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||| || ||||||||| |
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| T |
39475711 |
gctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgaca |
39475810 |
T |
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| Q |
267 |
tgttctgcacaaacatgattgatgttgccaa |
297 |
Q |
| |
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|||||||||| | |||||| |||||||||| |
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| T |
39475811 |
tgttctgcaccaccatgatcaatgttgccaa |
39475841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 39464563 - 39464451
Alignment:
| Q |
108 |
atgtcatcaaccttccagaagtttctgttctcccaacctctggtccaggttcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaacaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||| ||||||||| | ||||||||||||||| || ||||| ||| |||||||||||||||| |
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| T |
39464563 |
atgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgctatgaacgctctccttgatgctcacaaaccaaacgtcaaacaagc |
39464464 |
T |
|
| Q |
208 |
tatctccaacctc |
220 |
Q |
| |
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|||| |||||| |
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| T |
39464463 |
cgtctctaacctc |
39464451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 39483459 - 39483592
Alignment:
| Q |
167 |
aacgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaa---caacatggacccctcgccgctgtcattgttg |
263 |
Q |
| |
|
||||||||||| |||||||| ||| ||||| | | ||||||| ||||||||||||||||| ||||| |||||||||| |||| |||| || |||||| |
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| T |
39483459 |
aacgctctccttgaagctcagaaaccaaacataatacaagctgtctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttg |
39483558 |
T |
|
| Q |
264 |
acatgttctgcacaaacatgattgatgttgccaa |
297 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| |
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| T |
39483559 |
acatgttctgcaccaccatgattgatgttgccaa |
39483592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 306
Target Start/End: Original strand, 39451205 - 39451344
Alignment:
| Q |
170 |
gctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaac---aacatggacccctcgccgctgtcattgttgaca |
266 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||| | || |||||||||||||||| | || ||||| ||||||| | || ||||||||| |
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| T |
39451205 |
gctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttgaca |
39451304 |
T |
|
| Q |
267 |
tgttctgcacaaacatgattgatgttgccaaagaattttc |
306 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||||||||| |
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| T |
39451305 |
tgttctgcaccaccatgattgatattgccaaagaattttc |
39451344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 39472241 - 39472368
Alignment:
| Q |
173 |
ctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttct |
272 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| | || ||||||| ||| || | || ||||| ||| |||||| | ||||||||||||||| |
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| T |
39472241 |
ctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttct |
39472340 |
T |
|
| Q |
273 |
gcacaaacatgattgatgttgccaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
39472341 |
gcacaaacatgattgatgttgccaaaga |
39472368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 39460456 - 39460591
Alignment:
| Q |
174 |
tcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactg---gagaacaacatggacccctcgccgctgtcattgttgacatgtt |
270 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | || || ||||||||| ||||| |||||||| ||||| | || | ||||||||||||| |
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| T |
39460456 |
tcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacatgtt |
39460555 |
T |
|
| Q |
271 |
ctgcacaaacatgattgatgttgccaaagaattttc |
306 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||| |
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|
| T |
39460556 |
ctgcactaaaatgattgatattgccaaagaattttc |
39460591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 39464434 - 39464377
Alignment:
| Q |
258 |
ttgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgc |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
39464434 |
ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgc |
39464377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 39454840 - 39454984
Alignment:
| Q |
169 |
cgctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatg |
268 |
Q |
| |
|
||||| ||| |||||||| ||| |||||||||||||||| | || ||||||| |||||| ||| | |||| |||||| ||| || ||||||||||| |
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|
| T |
39454840 |
cgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgttgacatg |
39454939 |
T |
|
| Q |
269 |
ttctgcacaaacatgattgatgttgccaaagaattttccctccct |
313 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| || ||| ||||| |
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|
| T |
39454940 |
tcctgcacagccatgattgatgttgccaaagagttctccatccct |
39454984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 39458259 - 39458125
Alignment:
| Q |
172 |
tctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgttc |
271 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| |||| ||||||||||||||| | | | || ||||| ||| || || ||||||||||||||||| |
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|
| T |
39458259 |
tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaaagcaccagaaaatggagtcctagctgcattcattgttgacatgttc |
39458160 |
T |
|
| Q |
272 |
tgcacaaacatgattgatgttgccaaagaattttc |
306 |
Q |
| |
|
||||| | |||||||||||||| ||||||||||| |
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|
| T |
39458159 |
tgcaccaccatgattgatgttgtaaaagaattttc |
39458125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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