View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_84 (Length: 395)
Name: NF0928_low_84
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_84 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 149 - 395
Target Start/End: Complemental strand, 33825572 - 33825326
Alignment:
| Q |
149 |
taaaaggaagagattaaaagaaataattaattagtttagttagatcatatggaaaaacatattaaaccctaaagtttttagtggaccaaagaagtgtatc |
248 |
Q |
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| T |
33825572 |
taaaaggaagagattaaaagaaataattaattagtttagttagatcatatggaaaaacatattaaaccctaaagtttttagtggaccaaataagtgtatc |
33825473 |
T |
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| Q |
249 |
ccacgccagctgtactatttcttttataaagtaatctagtatttgtatgtgtaatcttgtggtatgtatgggttgagacaaggaagaaatattaagaaac |
348 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33825472 |
ccacgccagctttactctttcttttataaagtaatctagtatttgtatgtgtaatcttgtggtatgtatgggttgagacaatgaagaaatattaagaaac |
33825373 |
T |
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| Q |
349 |
taatcaagtgttttgctattagctaatttttgattaaatttcaaggt |
395 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
33825372 |
taatcaagtgttttgctattagcaaatttttaattaaatttcaaggt |
33825326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 33825684 - 33825639
Alignment:
| Q |
28 |
cactagaatcaccagctccatgtcagactctagtatagtgttgatc |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33825684 |
cactagaatcaccagctccatgtcagactctagtatagtgttgatc |
33825639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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