View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_86 (Length: 393)
Name: NF0928_low_86
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_86 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 393
Target Start/End: Complemental strand, 7342566 - 7342201
Alignment:
| Q |
30 |
accaacccaactcttgcattcaataatcccagccccaaaggccacccttcttcctgcattaacaccaaaaccatccaaagtctatatataaaataatcat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7342566 |
accaacccaactcttgcattcaataatcccagccccaaaggccacccttcttcctgcattaacaccaaaaccatccaaagtctatatataaaataatcat |
7342467 |
T |
|
| Q |
130 |
tnnnnnnnnnnnn--cagaatatgatagactaaattacagttataaatcgttttttaaaactttaactgcaagttataaattgcagctacataccatatg |
227 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7342466 |
taaaaaaaacaaaaacagaatatgatagactaaattacagttataaatcgttttttaaaactttaactgcaagttataaattgcagctacataccatatg |
7342367 |
T |
|
| Q |
228 |
ctactgcaatgcctaacacaatatcaaagttttgttatctccacgactgacggtcatgtttggattgacttatatgatcttatcaactgaaataatcact |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7342366 |
ctactgcaatgcctaacacaatatcaaagttttgttatctccaggactgacggtcatgtttggattgacttatatgatcttatcaactgaaataatcact |
7342267 |
T |
|
| Q |
328 |
tgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccataagttgttttcatctta |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7342266 |
tgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccgtaagttgttttcatctta |
7342201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 21872213 - 21872269
Alignment:
| Q |
283 |
atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt |
339 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
21872213 |
atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtt |
21872269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 22878250 - 22878194
Alignment:
| Q |
283 |
atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt |
339 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
22878250 |
atgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtt |
22878194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 17369354 - 17369309
Alignment:
| Q |
284 |
tgtttggattgacttatatgatcttatcaactgaaataatcacttg |
329 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||| ||||||||||| |
|
|
| T |
17369354 |
tgtttggattgacttatttgaacttatctactgacataatcacttg |
17369309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 83 times since January 2019
Visitors: 6713