View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_9 (Length: 776)

Name: NF0928_low_9
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_9
NF0928_low_9
[»] chr5 (1 HSPs)
chr5 (82-776)||(40102689-40103383)


Alignment Details
Target: chr5 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 82 - 776
Target Start/End: Original strand, 40102689 - 40103383
Alignment:
Q  82 gaacctgtgcctttacaaaatcaacaaacttcttagcacaactttctctatcgnnnnnnnngtcaataccttgtttcatctttttgattctcacaacatt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  40102689 gaacctgtgcctttacaaaatcaacaaacttcttagcacaactttctctatcgaaaaaaaagtcaataccttgtttcatctttttgattctcacaacatt 40102788  T
Q  182 cctaccaacaccgtgtttcaaaatagcctgttccaaatcaaatatactgcgcatatgcgaaacatgttgtcttaactgcacaacagcactccattgatta 281  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40102789 cctaccaacaccatgtttcaaaatagcctgttccaaatcaaatatactgcgcatatgcgaaacatgttgtcttaactgcacaacagcactccattgatta 40102888  T
Q  282 gggttagcattcacccgagcacaatcttcacaaatacgattatattgaacatactcaacaacataagactgttccaatattgttccattcataacctctt 381  Q
    | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40102889 gcgttcgcattcacccgagtacaatcttcacaaatacgattatattgaacatactcaacaacataagactgttccaatattgttccatttataacctctt 40102988  T
Q  382 tctgaacaaaaaccttgattttgataattttcgagtggggttcagttggaagggtttcagcatgtactaacctaactctcttgaatttcatattctgttc 481  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40102989 tctgaacaaaaaccttgattttgataattttcgagtcgggttcagatggaagggtttcagcatgtactaacctaactctcttgaatttcatattctgttc 40103088  T
Q  482 tagtttcttcaaacaaaatgcaagaaactgttttgattgtggtattagtttgatccaagtggggggttgtaaatagcattcgcattcggtgcaatgtgtt 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40103089 tagtttcttcaaacaaaatgcaagaaactgttttgattgtggtattagtttgatccaagtggggggttgtaaatagcattcgcattcggtgcaatgtgtt 40103188  T
Q  582 agtctaagtttcttgagtaaaccttctgtgatattggtttttgagcgtaaacatttgacacacatgttagcggtgtttagttcgagtggagaagcgcatt 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40103189 agtctaagtttcttgagtaaaccttctgtgatattggtttttgagcgtaaacatttgacacacatgttagcggtgtttagttcgagtggagatgcgcatt 40103288  T
Q  682 ggcaacagggaatggtgtggaatgtggcaagatttagttgatccattggtatgcaccttgacattttcggtgatcgaaagaaaataagtgtttcc 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40103289 ggcaacagggaatggtgtggaatgtggcaagatttagttgatccattggtatgcaccttgacattttcggtgatcgaaagaaaataagtgtttcc 40103383  T

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