View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_90 (Length: 384)
Name: NF0928_low_90
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 96 - 378
Target Start/End: Complemental strand, 28887236 - 28886957
Alignment:
| Q |
96 |
acattctctcttctttgatgggaatttggtgagattgaagaatcttgtaagaagtcggctcaggattttaaagaaaaggaaaattgagtttttcagattg |
195 |
Q |
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| T |
28887236 |
acattctctcttctttgatgggaatttggtgagattgaagaatcttgtaagaagtcagctcaggattttaaagaaaaggaaaattgagtttttcagattg |
28887137 |
T |
|
| Q |
196 |
taggggaactataatttatttatttttatgcattttgaaccgacgaatatttaaaaataaaatgaacaagttattttgtagagattttcaggaaaatcaa |
295 |
Q |
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| T |
28887136 |
taggggaactataattttttt---tttatgcattttgaaccgacgaatatttaaaaataaaatgaacaatttattttgtagagattttcaggaaaatcaa |
28887040 |
T |
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| Q |
296 |
gtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcacccttgtctctgctcc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28887039 |
gtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcacccttgtctctcctcc |
28886957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 32144410 - 32144485
Alignment:
| Q |
118 |
aatttggtgagattgaagaatcttgtaagaagtcggctcaggattttaaagaaaaggaaaattgagtttttcagatt |
194 |
Q |
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|||||| |||||||||||||| |||||||||||| | |||| |||| ||||||||||| |||||||||||||||| |
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| T |
32144410 |
aatttgatgagattgaagaatattgtaagaagtcaagtaagga-tttatagaaaaggaaatttgagtttttcagatt |
32144485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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