View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_93 (Length: 382)
Name: NF0928_low_93
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 38673057 - 38673207
Alignment:
| Q |
136 |
tagagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcatttttg |
235 |
Q |
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| T |
38673057 |
tagagtataaagtaacagtgtaaacaaatgggaaatacattataattatatagtggtgtctgtattgtgtttaaaaaattgtgttcatttatcatttttg |
38673156 |
T |
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| Q |
236 |
aatgagcttatgatcattttagttgattataatagcttagagtctaaattg |
286 |
Q |
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| T |
38673157 |
aatgagcttatgatcattttagttgattatagtagcttagagtctaaattg |
38673207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 11916552 - 11916649
Alignment:
| Q |
137 |
agagtataaagtaacagtgtaaacaaat--gggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt |
232 |
Q |
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| T |
11916552 |
agagtataaagtaacagtgtaaaaaaaaaagggaaataccttataattatacggtggtgtctgtattgtgtctaaaaaaatgtgtcaatttatcattt |
11916649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 15888857 - 15888758
Alignment:
| Q |
136 |
tagagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcatttttg |
235 |
Q |
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| T |
15888857 |
tagagtataaagtaaaagtgtaaacaaatggaaaataccgtataattatatagtggtgtctgtattgtgtttaaaaaattgtgttcatttatcatttttg |
15888758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 43187215 - 43187124
Alignment:
| Q |
141 |
tataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt |
232 |
Q |
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| T |
43187215 |
tataaagtaacagtgtaaagaaatgagaaattccgtataattatacagtggtgtctgtattatgcttaaaaaattgtgtccatttatcattt |
43187124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 9372872 - 9372965
Alignment:
| Q |
137 |
agagtataaagtaacagtgtaaacaaatgggaaatacactgtaattatatagtggtgtctgtattgtgtttaaaaaattgtgcccatttatcattt |
232 |
Q |
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| T |
9372872 |
agagtataaagtaacagtgtaaa-aaaagggaaataccgtataattatacggtggtgtctgtattgtgtctaaaata-tgtgtccatttatcattt |
9372965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 41764198 - 41764240
Alignment:
| Q |
189 |
tggtgtctgtattgtgtttaaaaaattgtgcccatttatcatt |
231 |
Q |
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| T |
41764198 |
tggtgtctgtattgtgtttgaaaatttgtgtccatttatcatt |
41764240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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