View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_95 (Length: 379)

Name: NF0928_low_95
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_95
NF0928_low_95
[»] chr6 (30 HSPs)
chr6 (1-379)||(31561679-31562057)
chr6 (196-379)||(33058591-33058773)
chr6 (196-379)||(33272818-33273002)
chr6 (196-290)||(33401639-33401733)
chr6 (124-379)||(33410916-33411162)
chr6 (1-92)||(33263476-33263567)
chr6 (203-379)||(9167804-9167981)
chr6 (196-290)||(33643574-33643667)
chr6 (1-74)||(33388880-33388953)
chr6 (1-78)||(33401459-33401536)
chr6 (196-287)||(33389066-33389157)
chr6 (196-286)||(33263653-33263743)
chr6 (1-74)||(33286384-33286457)
chr6 (122-379)||(33286490-33286752)
chr6 (315-379)||(33389215-33389279)
chr6 (4-74)||(9167608-9167678)
chr6 (1-75)||(33058402-33058476)
chr6 (1-71)||(33305322-33305392)
chr6 (315-379)||(33643475-33643539)
chr6 (301-368)||(33359849-33359916)
chr6 (1-61)||(33272638-33272698)
chr6 (301-379)||(33305618-33305696)
chr6 (187-291)||(33359719-33359829)
chr6 (123-160)||(9167706-9167743)
chr6 (123-160)||(33359655-33359692)
chr6 (123-159)||(33388987-33389023)
chr6 (125-160)||(33643709-33643744)
chr6 (313-379)||(33263793-33263859)
chr6 (123-160)||(33272745-33272782)
chr6 (124-160)||(33058513-33058549)
[»] chr2 (4 HSPs)
chr2 (1-76)||(17439996-17440071)
chr2 (196-288)||(17439794-17439888)
chr2 (124-159)||(17439925-17439960)
chr2 (301-379)||(17439698-17439776)
[»] chr4 (10 HSPs)
chr4 (5-91)||(31503284-31503370)
chr4 (5-76)||(31498065-31498136)
chr4 (5-62)||(31527261-31527318)
chr4 (7-59)||(31478166-31478218)
chr4 (1-62)||(31033078-31033139)
chr4 (313-379)||(31028816-31028882)
chr4 (6-60)||(31149203-31149257)
chr4 (313-379)||(31497790-31497856)
chr4 (9-78)||(31490957-31491026)
chr4 (313-377)||(31018938-31019002)
[»] scaffold1408 (2 HSPs)
scaffold1408 (2-66)||(1468-1532)
scaffold1408 (123-160)||(1598-1635)
[»] scaffold0428 (3 HSPs)
scaffold0428 (2-66)||(7214-7278)
scaffold0428 (316-379)||(7907-7970)
scaffold0428 (123-160)||(7344-7381)


Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 31562057 - 31561679
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31562057 ggggtgaaaacttgatggcaaatacttgaaaggatattcaagccactcaacatatcttaatttgttcgaaagacaattcgggctttctgagacgacattt 31561958  T
Q  101 ccaccataatttccaaagctgatgatgatgagcaatctaagattactcatttttgacaagccttgaactatcatatcaatccatccaatcaaagatatgg 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31561957 ccaccataatttccatagctgatgatgatgagcaatctaagattactcatttttgacaagccttaaactatcatatcaatccatccaatcaaagatatgg 31561858  T
Q  201 cctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatatgnnnnnnnaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||    
T  31561857 cctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattacttccaatatttatagtgtttgcaaaaatggaaatatgtttttttaa 31561758  T
Q  301 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561757 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 31561679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 379
Target Start/End: Original strand, 33058591 - 33058773
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatatgnnnn 295  Q
    |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||| ||  ||||||| |||| |||  |||||||||||||||        
T  33058591 tatggcttcaacatgcttttcctaaagcattgcaataaataaaataaaaaataaattacttttaatatttttagt-tttataaaaatggaaatatgtatt 33058689  T
Q  296 nnnaattctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
       | ||| |||||  ||||||||||| ||||||| |||||||| ||||| ||||||   |||||||||||||||||| |||||    
T  33058690 tttatttcaaaacattaactttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttct 33058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 379
Target Start/End: Original strand, 33272818 - 33273002
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaata-tgnnn 294  Q
    |||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||| || ||||||||||||| |||  | ||| ||||||| |        
T  33272818 tatggcttcaacatgcttttcctatagcattgcaacaaataaaagaaaaaataaattactttcaatatttatagtttttatataaacggaaatatttttt 33272917  T
Q  295 nnnnaattctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
        | ||||| | ||||| |||||||||||||||||| ||||||||| || |||||  | |||||||| |||||||||||||||    
T  33272918 atttatttctagagagaaagtttaccattttctccatcgtaacattgttgagttgtttttcggaccacaccctgctccactttct 33273002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 33401639 - 33401733
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatat 290  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |||  ||||||||||||||    
T  33401639 tatggcttcaacattcttttcctaaagcattgcaaaacatataagaaaaaataaattactttcaatatttatagtttttataaaaatggaaatat 33401733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 379
Target Start/End: Original strand, 33410916 - 33411162
Alignment:
Q  124 gatgatgagcaatctaagattactcatttttgacaagccttgaactatcatatcaat-ccatc--caatcaaagatatggcctcaacatgcttttcctaa 220  Q
    ||||||||||||||||||||||||||||||||| |||  || |||  |||||||||| |||||  || ||||| ||||||| |||||||||| |||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaacgttcatatcaatcccatcatcattcaaaaatatggcttcaacatgctcttcctaa 33411015  T
Q  221 agcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatatgnnnnnnnaattctaaacagaaactttacc 320  Q
     |||||            | ||||||||||||| || ||||||||||||| |||  |||||||||||| ||       | ||||||||||  ||||||||    
T  33411016 tgcatt------------acaaaaaataaattactttcaatatttatagtttttataaaaatggaaatgtgttttttaatttctaaacagttactttacc 33411103  T
Q  321 attttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    || |||||||||||||| ||||||| |||||  | |||||| | |||||||||||||||    
T  33411104 atattctccatcataacgttgtagagttgttttttggaccagatcctgctccactttct 33411162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 33263476 - 33263567
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgaga 92  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||| ||||||||| | |||||| ||||||    
T  33263476 ggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgaga 33263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 379
Target Start/End: Original strand, 9167804 - 9167981
Alignment:
Q  203 tcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatatg-nnnnnnnaat 301  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||||| || ||||||||||||| | |   ||||||||||||||        | |    
T  9167804 tcaacatgcttttcctaaagaattgcaaaaaataaaagaaaaagtaaattactttcaatatttatagtttatatgaaaatggaaatatgtcttttttatt 9167903  T
Q  302 tctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    | ||||||   ||||||||||  ||||||||  ||||||||||| |||||  | |||||||||||||||||| |||||    
T  9167904 tataaacaactactttaccatactctccatcgcaacattgtagagttgttttttggaccacaacctgctccattttct 9167981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 33643667 - 33643574
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaatat 290  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||||| |||||| |||  ||||||||||||||    
T  33643667 tatggcttcaacatgcttttcctaaagcattgaaaaaaataaaagaaaaaattaattactttcaatatgtatagt-ttttaaaaaatggaaatat 33643574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33388880 - 33388953
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagac 74  Q
    |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||||||| |||| |||||||    
T  33388880 ggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagac 33388953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33401459 - 33401536
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaatt 78  Q
    |||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||| ||| |||||| ||||    
T  33401459 ggggtgaaaacttgttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatt 33401536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 33389066 - 33389157
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaaa 287  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| || | |||||| |||| |||  |||||||||||    
T  33389066 tatggcttcaacatgcctttcctaaagcattgcaaaaaataaaagtaaaaataaattactttcgatatttgtagtttttataaaaatggaaa 33389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 33263653 - 33263743
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaatatttatagtgtttgcaaaaatggaa 286  Q
    |||||| | ||| ||||||||||||||||  |||||| |||||||||||||||||||| || ||||||||||||| |||  ||||||||||    
T  33263653 tatggctttaacttgcttttcctaaagcaaagcaaaaaataaaagaaaaaataaattaatttcaatatttatagtttttataaaaatggaa 33263743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33286384 - 33286457
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagac 74  Q
    |||||||||| ||||||||||||| |||||||||||| ||  ||||| |||||||||||||||||| |||||||    
T  33286384 ggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagac 33286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 379
Target Start/End: Original strand, 33286490 - 33286752
Alignment:
Q  122 atgatgatgagcaatctaagattactcatttttgacaagccttgaactatcatatcaatc-catc--caatcaaagatatggcctcaacatgcttttcct 218  Q
    |||||||||||||||||||||||||||||||||||||||  || |||  |||   ||| | | ||  || |||||  || ||| | ||||||||||||||    
T  33286490 atgatgatgagcaatctaagattactcatttttgacaagtgttcaacattcaatccaacctcttcatcattcaaaactaaggctttaacatgcttttcct 33286589  T
Q  219 aaagcattgcaaaacataaaagaaaaaataaatta---tttccaatatttatagtgtttgcaaaaatggaaatatgnnnnnnnaattctaaacagaaact 315  Q
    |||||||||||||  ||||||||||||||||||||    |||| | |   ||  |||||  |||| ||||||||||       | | |||||||  ||||    
T  33286590 aaagcattgcaaacaataaaagaaaaaataaattacttgttccta-aagcatgctgtttataaaactggaaatatgtttttttattactaaacaacaact 33286688  T
Q  316 ttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    ||||||| ||||||| |||||||||||||| ||||||   |||||||||||||||||| |||||    
T  33286689 ttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttct 33286752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 33389215 - 33389279
Alignment:
Q  315 tttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||| |||||||||||||||    
T  33389215 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttct 33389279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 9167608 - 9167678
Alignment:
Q  4 gtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagac 74  Q
    ||||||||| ||||||||||||||||||||||||  |  |||||||| ||||||||||| |||||||||||    
T  9167608 gtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaagac 9167678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33058402 - 33058476
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagaca 75  Q
    |||||||||| ||||||||||||||||| ||||||||  || ||| | |||| ||||||||||||||||||||||    
T  33058402 ggggtgaaaatttgatggcaaatacttggaaggatatctaaaccagtgaacaaatcttaatttgttcgaaagaca 33058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 33305322 - 33305392
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaa 71  Q
    |||||||||| |||||||||||||||| ||||||||||||  ||| ||||||||| |||||||||| ||||    
T  33305322 ggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaacatattttaatttgtttgaaa 33305392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 33643539 - 33643475
Alignment:
Q  315 tttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||| |||||||||| |||||||||||||||||  | |||||||| |||||||||||||||    
T  33643539 tttaccatattctccatcacaacattgtagatttgttttttggaccacagcctgctccactttct 33643475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 33359849 - 33359916
Alignment:
Q  301 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctg 368  Q
    ||||||||||  |||||||||| |||||| ||||||||||| | ||||||| ||||||||||||||||    
T  33359849 ttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctg 33359916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33272638 - 33272698
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaat 61  Q
    |||||||||||||| ||| | | |||||||||||||| || ||||||||||||||||||||    
T  33272638 ggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaat 33272698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 33305618 - 33305696
Alignment:
Q  301 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    ||||||||||  |||||||||| ||||||| |||||||||||||| ||| |  | |||||| | |||||||||||||||    
T  33305618 ttctaaacagttactttaccatattctccaccataacattgtagagttgctttttggaccagaccctgctccactttct 33305696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 33359719 - 33359829
Alignment:
Q  187 aatcaaagatatggcctcaacatgcttttcctaaagcattgcaaaaca-taaaa-----gaaaaaataaattatttccaatatttatagtgtttgcaaaa 280  Q
    |||||||  |||||| |||||||| ||||||||||| ||||||||| | |||||     |||||||||||||| || ||||||||||||| |||  ||||    
T  33359719 aatcaaaactatggcttcaacatgtttttcctaaagtattgcaaaaaaataaaaataaagaaaaaataaattactttcaatatttatagtttttataaaa 33359818  T
Q  281 atggaaatatg 291  Q
    ||| |||||||    
T  33359819 atgaaaatatg 33359829  T

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Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 9167706 - 9167743
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaag 160  Q
    |||||||||||||||||||| |||||||||||||||||    
T  9167706 tgatgatgagcaatctaagactactcatttttgacaag 9167743  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 33359655 - 33359692
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaag 160  Q
    |||||||||||| |||||||||||||||||||||||||    
T  33359655 tgatgatgagcactctaagattactcatttttgacaag 33359692  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 33388987 - 33389023
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaa 159  Q
    |||||||||| ||||||||||||||||||||||||||    
T  33388987 tgatgatgagtaatctaagattactcatttttgacaa 33389023  T

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Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 33643744 - 33643709
Alignment:
Q  125 atgatgagcaatctaagattactcatttttgacaag 160  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33643744 atgatcagcaatctaagattactcatttttgacaag 33643709  T

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Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 33263793 - 33263859
Alignment:
Q  313 actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||| ||||||||| |||||||||||| |||||    |||||||||||| ||||| |||||    
T  33263793 actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttct 33263859  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 33272745 - 33272782
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaag 160  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  33272745 tgattatgagcaatctaagattactcatttttgccaag 33272782  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 33058513 - 33058549
Alignment:
Q  124 gatgatgagcaatctaagattactcatttttgacaag 160  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  33058513 gatgaagagcaatctgagattactcatttttgacaag 33058549  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17440071 - 17439996
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaa 76  Q
    |||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  17440071 ggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaagacaa 17439996  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 17439888 - 17439794
Alignment:
Q  196 tatggcctcaacatgcttttcctaaagcattgcaaaacataaaagaaaaaataaattatttccaata--tttatagtgtttgcaaaaatggaaat 288  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||| || |||||  |||||||| | |  ||||||||||||    
T  17439888 tatggcttcaacatgcttttcctaaagcattgcgaaaaataaaagaaaacataaattactttcaatacttttatagtttctataaaaatggaaat 17439794  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 17439960 - 17439925
Alignment:
Q  124 gatgatgagcaatctaagattactcatttttgacaa 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  17439960 gatgatgagcaatctaagattactcatttttgacaa 17439925  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 17439776 - 17439698
Alignment:
Q  301 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||  ||||||||||||||| |||| |||||||  |||| ||||||    ||||||||||||||||| |||||    
T  17439776 ttctaaacaacaactttaccattttcgccataataacatcatagagttgttctgtagaccacaacctgctccattttct 17439698  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 31503370 - 31503284
Alignment:
Q  5 tgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaattcgggctttctgag 91  Q
    ||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||| ||| |||||||||||  ||||| |||||    
T  31503370 tgaaaacttgacggcaaatacttgaaaggatattcactccattcaacatatcttaattcgttagaaagacaattgaggcttcctgag 31503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 31498136 - 31498065
Alignment:
Q  5 tgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaa 76  Q
    |||||| ||||||| |||||| ||||||||||||||  |||||||| ||||||||||||||| |||||||||    
T  31498136 tgaaaatttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaa 31498065  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 31527261 - 31527318
Alignment:
Q  5 tgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 62  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31527261 tgaaaacttgatggcaaatacatgaaaggatattcccgccactcaacatatcttaatt 31527318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 31478218 - 31478166
Alignment:
Q  7 aaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatctta 59  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  31478218 aaaactcgatggcaaatacttgaaaggatattcactccactcaacatatctta 31478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31033078 - 31033139
Alignment:
Q  1 ggggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatt 62  Q
    ||||||||||||||  ||||||||| ||||||||||||||  ||||||||||||||| ||||    
T  31033078 ggggtgaaaacttgtaggcaaatacatgaaaggatattcagtccactcaacatatctcaatt 31033139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 31028816 - 31028882
Alignment:
Q  313 actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||| ||||||| ||| ||||||| ||  |||||  |||||||||||||||||||||||||    
T  31028816 actttaccatattctccaacattacattgttgaaatgttcgagggaccacaacctgctccactttct 31028882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 31149203 - 31149257
Alignment:
Q  6 gaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaa 60  Q
    ||||||||||||||||||||||||||||||||  |  |||||| |||||||||||    
T  31149203 gaaaacttgatggcaaatacttgaaaggatatctattccactcgacatatcttaa 31149257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 31497856 - 31497790
Alignment:
Q  313 actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    |||||||||| ||||||| |||||||| ||||| |||||| |   ||||||||||||||||||||||    
T  31497856 actttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccactttct 31497790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 31491026 - 31490957
Alignment:
Q  9 aacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgttcgaaagacaatt 78  Q
    |||||||||| ||||||  ||||||||||||| |||| |||| |||||||||||| || |||||| ||||    
T  31491026 aacttgatggtaaatacaagaaaggatattcatcccattcaagatatcttaatttattagaaagataatt 31490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 31018938 - 31019002
Alignment:
Q  313 actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccacttt 377  Q
    |||||||||| ||||||| ||| ||||||| ||  |||||  || ||||||||||||||||||||    
T  31018938 actttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccacttt 31019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 1468 - 1532
Alignment:
Q  2 gggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgtt 66  Q
    ||||||||||||||||||| |||||||||||||||| ||  ||| | |||||||| |||||||||    
T  1468 gggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaatttgtt 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 1598 - 1635
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaag 160  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  1598 tgatgattagcaatctaagattactcattgttgacaag 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 7214 - 7278
Alignment:
Q  2 gggtgaaaacttgatggcaaatacttgaaaggatattcaacccactcaacatatcttaatttgtt 66  Q
    ||||||||||||||||||| |||||||||||||||| ||  ||| | |||||||| |||||||||    
T  7214 gggtgaaaacttgatggcagatacttgaaaggatatccagtccattgaacatatcgtaatttgtt 7278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 7907 - 7970
Alignment:
Q  316 ttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttct 379  Q
    ||||||| ||||||||| |||||||||||| |||||  | |||||||| |||||||||||||||    
T  7907 ttaccatattctccatcgtaacattgtagagttgttgtttggaccacatcctgctccactttct 7970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 7344 - 7381
Alignment:
Q  123 tgatgatgagcaatctaagattactcatttttgacaag 160  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  7344 tgatgattagcaatctaagattactcattgttgacaag 7381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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